PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02738.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 724aa    MW: 78451.1 Da    PI: 5.4428
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02738.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.34.7e-16437475240
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  KHN02738.1 437 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCACHDCFNKP 475
                 689**********************************96 PP
2TCR50.25.1e-16522561140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  KHN02738.1 522 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTY 561
                 589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-18436477IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.811437562IPR005172CRC domain
PfamPF036381.4E-11439474IPR005172CRC domain
SMARTSM011142.6E-17522563IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-11524560IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MATVTRNPDS SRGNSEIFFS FLFIVLDDCE WHWHNLLETS KPKVWSEDVN SVYSSEETLA  60
DSTQACHESS EQQENTAQKI SIGDASIEPC NENPNISIEL PQVLKCNLGS PGYEPLLCCD  120
EANSLLELPG NGKPASDVAY VPEGSEKDSI EGEMHLLGLC QIEEAKVEGP NCGVDSLITE  180
VSDLLMLSPP NVTEAFKGLN KQLNPSIELG NFMTLIPQSA TNDGQQMHIG NAVASGSEHE  240
IEDHPSESAA ATGTGQRQDN LANVALVASH PSENMDNKLV YARHRGIRRR CLDFEMAIVQ  300
WKNPADNSNT NSSTAISDEG NVGNEKQLLP TKHSGDSRRC VLPGIGLHLN ALASLKDCKN  360
VKIENLSSGR QPNLHCSPSS VQLSASQELQ LSLVPASSEI DLVPSENEVQ PAFPFFVGLI  420
LSWIYRCKLE PAGEGESCKR CNCKKSKCLK LYCECFAAGV YCIEPCACHD CFNKPIHVET  480
VLQTRQQIES RNPLAFAPKV IRSSDSVSEI GDDPNKTPAS ARHKRGCNCK KSSCLKKYCE  540
CYQGGVGCSI SCRCEGCKNT YGRKDGSVPS GLEAEPEEET EACEKGVVEN ASLKTETKNT  600
EDHPDQSLAT TPLPLSRSLL PLSFSSKCKP PRSSVITISS SGLLVGQKLG KSNAPWSQSQ  660
PKCEKPLETV PDDDSSVTCI KTSSPNGKRI SSPNCKVGSS PTRRGGRKLI LQSISSFPSL  720
TPHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1743955912120Protein lin-54 homolog
5fd3_B8e-1743955912120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535640.10.0protein tesmin/TSO1-like CXC 2
RefseqXP_028185643.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A445ISF10.0A0A445ISF1_GLYSO; Protein tesmin/TSO1-like CXC 2 isoform B
STRINGGLYMA10G39080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-92TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]