PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02732.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 381aa    MW: 43208.1 Da    PI: 7.1262
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02732.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.11.5e-421052491133
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg......... 88 
                 a++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel++++ s + ++  + +ss+  ++ s+++         
  KHN02732.1 105 ATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSGSVSTggD-KSSRDPSGDSNNNfnnnksmvg 202
                 579**************************************************************55555333321.1111111111111334446789 PP

         TCP  89 ...kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                       ++  k k +q+++a   + +kesr++arararert  k++ +
  KHN02732.1 203 ggvGDGSKGRKLKWAQRDDA-CIQNKKESRERARARARERTCFKKCSS 249
                 99844455556666666666.4677889*************9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.2E-42106247IPR005333Transcription factor, TCP
PROSITE profilePS5136934.814108166IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.424228245IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MFSSTYDSNF FPNFPLSTYP ILPFLIESEN DFASHTLLVE DPLVVPLTHD PPPFPEETVA  60
NFAVADHHCT AMLDNQHDAA ANTNYGSHYG SSISNFLTHQ KPAAATAKKD RHSKIHTSQG  120
LRDRRVRLSS EIARKFFDLQ DMLEFDKPSN TLEWLFTKSE NAIKELARSK HSGSVSTGGD  180
KSSRDPSGDS NNNFNNNKSM VGGGVGDGSK GRKLKWAQRD DACIQNKKES RERARARARE  240
RTCFKKCSSI RVQQQKDFDE RCPATTNTTQ MLHQLWSSIQ PEPEEPRARW VQPYYNPYFV  300
DDNEAPRDHG FNVIEESIMI KRNMKPLSQP NLVIPREASF NNNEFPLLPY STTPNWESTN  360
GAVNYCGIST MNLSTCFMNP W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230240RERARARARER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02732.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184954.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A445ISB40.0A0A445ISB4_GLYSO; Transcription factor CYCLOIDEA
STRINGGLYMA10G39141.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-24TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]