PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02685.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 777aa    MW: 86223.1 Da    PI: 6.5629
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02685.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1775130156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rr+ t++t +q+ e+e++F+++++p++++r+ L ++lgL   q+k+WFqN+R++ k
  KHN02685.1  75 RRRHTRHTLHQISEMEAFFKECPHPDEKQRKALGRELGLVPLQIKFWFQNKRTQVK 130
                 7899************************************************9877 PP
2START1632.3e-513015146205
                 HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.... CS
       START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.... 88 
                 a +e +++ l+++p+Wv      e  n+de+l+ f+++ +      ++e +r +++v m +++lve l+d++ qW++++     +a t+ev+s g    
  KHN02685.1 301 AVEEINQLTLSADPLWVPGNygsEVINEDEYLRHFPRGIGptllgARTESSRQTAIVMMHHMKLVEMLMDVN-QWSNMFCgivsRAVTHEVLSIGdhar 398
                 567888999999*****988888889***********999********************************.******999***************** PP

                 ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
       START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                   ga+q+m+ae+q++splvp Rd +f+R+++++ + +w++vd+S d+ ++      v R +++pSg++i++++ng+skv+wvehv++++  +h+l++ l
  KHN02685.1 399 ydGAYQVMSAEFQVPSPLVPtRDNYFIRFSKKHAGQSWAVVDISMDHLRPGA----VTRTRRRPSGCIIQELPNGYSKVIWVEHVEVDDIEVHNLYKNL 493
                 **************************************************98....8****************************************** PP

                 HHHHHHHHHHHHHHHTXXXXX CS
       START 185 vksglaegaktwvatlqrqce 205
                 v+s+la+gak+wva+ +r ce
  KHN02685.1 494 VNSTLAFGAKRWVAAIERTCE 514
                 ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1959126IPR009057Homeodomain-like
SuperFamilySSF466891.75E-1768138IPR009057Homeodomain-like
PROSITE profilePS5007116.14772132IPR001356Homeobox domain
SMARTSM003895.6E-1774136IPR001356Homeobox domain
PfamPF000463.8E-1575130IPR001356Homeobox domain
CDDcd000861.33E-1675133No hitNo description
PROSITE profilePS5084834.356287518IPR002913START domain
CDDcd088751.85E-93291514No hitNo description
SMARTSM002342.0E-44296515IPR002913START domain
PfamPF018524.8E-43302514IPR002913START domain
SuperFamilySSF559611.1E-25350516No hitNo description
Gene3DG3DSA:3.30.530.209.2E-4362509IPR023393START-like domain
SuperFamilySSF559611.26E-20536769No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MYNKSQNTKF DSQQQQQQQQ PQQQQPQNLM EMSTQRTSSE GRNRDDQEPA AGNEVTMEAP  60
PSGDEDQDPD EGFKRRRHTR HTLHQISEME AFFKECPHPD EKQRKALGRE LGLVPLQIKF  120
WFQNKRTQVK SQQERYENNL LRVENDKLRA ENSRYRNALS NTSCPNCGAP TTLGEMSFDE  180
QQLRMENARQ KEEIDSMSGL AAKYAAGKSA SNSYYNMPSN QNQMPSRSLD LGVVNNNSSI  240
NNNNSSINNS NNKNNNNNNY VVQAQPVAMV GEMYGGNDPL RELPLLSSFD KDLISEIGLV  300
AVEEINQLTL SADPLWVPGN YGSEVINEDE YLRHFPRGIG PTLLGARTES SRQTAIVMMH  360
HMKLVEMLMD VNQWSNMFCG IVSRAVTHEV LSIGDHARYD GAYQVMSAEF QVPSPLVPTR  420
DNYFIRFSKK HAGQSWAVVD ISMDHLRPGA VTRTRRRPSG CIIQELPNGY SKVIWVEHVE  480
VDDIEVHNLY KNLVNSTLAF GAKRWVAAIE RTCEHLARAM ATNIPQGALC VITSHEGRKS  540
MMKLAERMVL SFSTGVGAST ANAWTPLPLD LENVRVMTRK SVDDPGRPSG VVLSAATSLW  600
LPVPARRVFD FLRSENTRNQ WDILSSGAQV NELAHIAKGR DHGNSVSLLR VNTQNVAQNN  660
MLILQESCID ATGSFVVYAP IDLASMNLVL GGGNPDYVAL LPSGFAVLPD GPALNVVPGP  720
VCEVVGSGRG CLLTVAFQIL VDSTPTAKLS VGSVTTVNNL IKRTVERIKD SVTLDGA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02685.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183813.10.0homeobox-leucine zipper protein MERISTEM L1-like isoform X2
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A445ISQ10.0A0A445ISQ1_GLYSO; Homeobox-leucine zipper protein MERISTEM L1 isoform A
STRINGGLYMA10G39720.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2237224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  5. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  6. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  7. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  8. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]