PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02579.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 473aa    MW: 51304.2 Da    PI: 8.4017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02579.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.82.2e-23163219259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vk+   +rsYYrCt++ C++kk ++ +++ ++v+ei+Y+++H h+
  KHN02579.1 163 SDGYNWRKYGQKQVKSPMGSRSYYRCTHSYCCAKK-IKFCDHSGHVIEIVYKSQHSHD 219
                 7********************************98.999999***************7 PP
2WRKY91.66.1e-29336392359
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dgy+WrKYGqK vkg+++ r+YYrCt+agCpv+k++e++ ++ k+++itY+g H+h+
  KHN02579.1 336 DGYRWRKYGQKLVKGNPHFRNYYRCTTAGCPVRKHIETAVDNSKALIITYKGMHDHD 392
                 9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.178157221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-20157221IPR003657WRKY domain
SuperFamilySSF1182902.88E-19160221IPR003657WRKY domain
SMARTSM007742.2E-21162220IPR003657WRKY domain
PfamPF031061.0E-16164219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-30319394IPR003657WRKY domain
SuperFamilySSF1182907.19E-26328394IPR003657WRKY domain
PROSITE profilePS5081130.526329394IPR003657WRKY domain
SMARTSM007744.3E-32334393IPR003657WRKY domain
PfamPF031061.4E-22336391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MKEDEETQQN QQQITDSSLS TESRTSTPSD GAPPNSETLV LRSSLLHDLA THMQGSSTAR  60
KGGKAESKVS AQPPDEETVV KDAVEAPKKQ TENRLQSFCS TSLSGVSPTS VSHSLSSALS  120
PTVPQQRPSP PKANSVQVPK VDKGTPSDGT TLSSVSVARA SASDGYNWRK YGQKQVKSPM  180
GSRSYYRCTH SYCCAKKIKF CDHSGHVIEI VYKSQHSHDP PHKIDTAKES KLLPSSEPKV  240
ESSVSKHSTN VLNDSDPSSS PKELLQETPC SGDKNLENSS NVENGKIILN DEHVNDPEPK  300
RRQVALNNSD LDTAVKPGKK TKFVVHATKD VGISGDGYRW RKYGQKLVKG NPHFRNYYRC  360
TTAGCPVRKH IETAVDNSKA LIITYKGMHD HDMPVPKKRH GPPSASLVAA AAPASTNNVQ  420
LKKTGLLQNQ ETEAQCLEDT EGELTGEALD LGGEKAIESA RTLLSIGFEI KPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-25325394877Probable WRKY transcription factor 4
2ayd_A7e-25321394174WRKY transcription factor 1
2lex_A9e-25325394877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312550.0KT031255.1 Glycine max clone HN_CCL_20 WRKY transcription factor (Glyma06g27440.3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304613.20.0probable WRKY transcription factor 32
RefseqXP_028223005.10.0probable WRKY transcription factor 32
SwissprotP595831e-118WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A0B2P4M90.0A0A0B2P4M9_GLYSO; Putative WRKY transcription factor 32
STRINGGLYMA06G27440.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-105WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]