PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN02521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 23087.8 Da PI: 6.7593 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.9 | 8.3e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+k l++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l++l+ KHN02521.1 7 PCGACKFLRRKCVRGCVFAPYFCHEQgSTHFAAIHKVFGASNVSKHLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVSLQAQLVYLR 105 7*************************88********************************************************************999 PP DUF260 99 ee 100 e+ KHN02521.1 106 EQ 107 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.658 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-36 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGSTHFAAI HKVFGASNVS KHLAHLPVSD 60 RCEAAVTISY EAQARLQDPI YGCVAHIFAL QQQVVSLQAQ LVYLREQASQ IYLNGSATEN 120 PNEKYLGKPT TFPQDLQSWF QMENSNLASQ FLPNLSTNPS TQYYGNTNTL VEPNPIGNYE 180 NSGTVEESIS FSSFKESCNS MSYDMQRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN02521.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092157 | 0.0 | BT092157.1 Soybean clone JCVI-FLGm-10A4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028217973.1 | 1e-156 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 2e-66 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A445FHA3 | 1e-155 | A0A445FHA3_GLYSO; LOB domain-containing protein 29 | ||||
TrEMBL | I1N9P6 | 1e-155 | I1N9P6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G34600.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 5e-59 | lateral organ boundaries-domain 29 |