PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02518.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 889aa    MW: 98233.3 Da    PI: 6.9097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02518.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000726556921355
                 HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  KHN02518.1 655 RQLIQDRIKELRELVPNgA------KCSIDSLLERTIKHMLFLQ 692
                 67799************77......7777779999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-2794267IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00338635692No hitNo description
PROSITE profilePS5088810.772642691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MHGVVSDNMI AVDGQWWITL CCSVKCGCVL VREKRKKVGS FGWWGGGNCH GCGSSDTANS  60
WTAIKTASRV AEEAGWKRVL QRELGGGDNM GTNLHQVLGS LCLNTHWNYA IFWKLKHRAR  120
IFSLIFLPVL CPSSKFGDFH AWILTWEDAY YNNPDDFDSS ENKHCQKTLE QIGCGKFSHS  180
ALGLAVAKMS YHAYSLGEGI VGQVAVTGKH RWICADNQVA SSGLSFEFAD GWQSQFSAGI  240
RTIAVVAVVP LGVVQLGSLN KLDKSKENFS SDIMRTCFYD TQKSMKSETA DVLMPLQCSG  300
TGRNCTPPSA CEKMSDNVAK QEGPELYNDE SSILLQSISN MMNVDCQEFE EMKPLYGTKY  360
EGGSSGCKDM RLESEKNVSS FLNDFVTDNA SFNDVICPSE KVRVDSACFP SVFLDTVVCE  420
SDKLHYADIN QKGALNFAQP SEANSQQHIE KSKFHTEPCY KDIPDFQTEP CYKDASHILK  480
FPAGCELHEA LGPAFLKGGK CLDWPAQINQ EMKSVEMSDE ISTSQLTSES CPEHLLEAML  540
ANFSHSNNDV NSELSFCKSK QSAIVSAKNH EASIHNVHTI NSEGYSIDQL SLVREDKHHS  600
LSSSSGICGV MSSKGISSTF HSSNSGQLER SSEPSKNSKK RARPGESCRP RPRDRQLIQD  660
RIKELRELVP NGAKCSIDSL LERTIKHMLF LQSITKHADK LTDFSDTKSK LHHKEADILG  720
SSSYEQGSSW AMEVGGHLKV HSILVENLSK NGQMLVEMLC EECNHFLEIA EAIRSLGLTI  780
LKGATKAHGE KMWICFVVER RASGQWGTKF LRASPGAAVK LCLGDLLVMG SNPETASLHM  840
QGVKTREMYT DWISCGRLFK YCNPRAPCIH INLLVLGNYG HSLASVTHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02518.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553489.10.0transcription factor EMB1444
RefseqXP_028218935.10.0transcription factor EMB1444-like
TrEMBLA0A445FH630.0A0A445FH63_GLYSO; Transcription factor EMB1444 isoform A
TrEMBLK7MYP00.0K7MYP0_SOYBN; Uncharacterized protein
STRINGGLYMA19G34621.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.31e-112conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]