PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02511.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 144aa    MW: 16146.7 Da    PI: 6.2579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02511.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-191869256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+G+r+++ +g+++AeIrdp++ g  +r++lg+f+tae+Aa+a++ a+  ++g+
  KHN02511.1 18 RYRGIRRRP-WGKFAAEIRDPTIKG--TRIWLGTFDTAEQAARAYDTAAFHFRGH 69
                69*******.**********97744..***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.15E-291877No hitNo description
PfamPF008471.1E-121869IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-321878IPR001471AP2/ERF domain
SMARTSM003805.4E-371882IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-231877IPR016177DNA-binding domain
PROSITE profilePS5103225.041876IPR001471AP2/ERF domain
PRINTSPR003678.2E-121930IPR001471AP2/ERF domain
PRINTSPR003678.2E-124258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEGGRGVVNG NPSNAEVRYR GIRRRPWGKF AAEIRDPTIK GTRIWLGTFD TAEQAARAYD  60
TAAFHFRGHK AILNFPNEYG HVTPDQNSST SLPLPLSSSS SSPYYPQQQQ QGNDDDTFEL  120
ECLDNKFLEE LLQQAPDRSG NRSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-29279375Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02511.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-85AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216106.11e-105ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A445FH951e-104A0A445FH95_GLYSO; Ethylene-responsive transcription factor ERF098
STRINGGLYMA03G31930.17e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-36ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]