PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02252.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 578aa    MW: 65621.7 Da    PI: 6.8293
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02252.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.93.3e-29120205187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l+L+e+r++++++++++++k+plW evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  KHN02252.1 120 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWVEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 205
                 8*************************************999*****************************98..55667*******85 PP
2trihelix56.66.8e-18422504284
    trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                 Wt++e+  L ++r eme+r+ + g++++  Wee++ km+  g+ers++  kekwe+++++ + +k+g+kkr +e+s++c yfd+
  KHN02252.1 422 WTESEIARLQQLRAEMETRYMQsGCSEEVMWEEIATKMACFGYERSAVVFKEKWESISNYARSVKDGSKKR-KEDSRSCFYFDN 504
                 *******************98648**********************************************8.88899*****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.946113178IPR017877Myb-like domain
SMARTSM007170.76117180IPR001005SANT/Myb domain
CDDcd122032.28E-19120185No hitNo description
PfamPF138374.0E-20120206No hitNo description
SMARTSM007178.2418481IPR001005SANT/Myb domain
PfamPF138373.5E-11420506No hitNo description
PROSITE profilePS500906.028421479IPR017877Myb-like domain
CDDcd122037.84E-17422486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MEMEDHHQYG IADLRQLVNG PRPTHFPAMP PQPKAELFPG GGGGHPNLQA ATQQHYEMMM  60
FGRQVADIIP RCLHDFAPTD SATNIAVATP TTTTSASTPP LSCLEAETAG CIGGDASTGR  120
WPRQETLTLL EIRSRLDSKF KEANQKGPLW VEVSRIMSEE HGYQRSGKKC REKFENLYKY  180
YKKTKEGKAG RQDGKHYRFF RQLEALYGEN SNQASVPETN FGSGSLRFHT SSHNNPSQTN  240
QEMFQSQKHC DSLSLTNSTD LDTSSSDDND QNSTGGGLKD NDSMEKRRKR VSGRSWKVKI  300
KDFIDSQMRK LVEKQEEWLD KLTKTLEQKE KERVLREEEW RRQEAARLER EHKFWAKERA  360
WIEARDAALM EALHKLTGNG IIKSTHSPDG LMVTGIQNHS ENQNEDGSEI LNSTTARGAE  420
SWTESEIARL QQLRAEMETR YMQSGCSEEV MWEEIATKMA CFGYERSAVV FKEKWESISN  480
YARSVKDGSK KRKEDSRSCF YFDNSDQSSL YNQGGAYCDI NDQRHKTGRL QTNDGSSPSN  540
SNVGNTVAVD NCFPFLMTES GNLWENYSLK VNKASQNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553586.10.0trihelix transcription factor PTL
RefseqXP_028215871.10.0trihelix transcription factor PTL-like
TrEMBLA0A445FIK50.0A0A445FIK5_GLYSO; Trihelix transcription factor PTL
TrEMBLI1NAJ90.0I1NAJ9_SOYBN; Uncharacterized protein
STRINGGLYMA19G37660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-120Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]