PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN02024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 19250.1 Da PI: 8.4697 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.5 | 4.5e-15 | 9 | 57 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+ Vr+++ +g+Wv eI p++ r+r +lg+f+t eeAa +++ + kl+g KHN02024.1 9 YRRVRQRH-WGKWVTEISLPKN---RTRLWLGTFDTIEEAALVYDNTAFKLRG 57 999***99.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.35E-28 | 7 | 67 | No hit | No description |
PROSITE profile | PS51032 | 19.599 | 8 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-29 | 8 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-18 | 8 | 66 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-26 | 8 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 9 | 20 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-9 | 10 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MATKTAKLYR RVRQRHWGKW VTEISLPKNR TRLWLGTFDT IEEAALVYDN TAFKLRGKFA 60 RLNFPHLRHH EAFFFGEFED YRPLPSSVDS KLQAICKSLV KQEEKSCCFV KDVKPVIHAT 120 ELAEVESSVA KLNVEYVYPE FEDFKVENEN PMLPSNSLVV FLSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-18 | 6 | 65 | 3 | 63 | ATERF1 |
3gcc_A | 7e-18 | 6 | 65 | 3 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN02024.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY296651 | 1e-145 | AY296651.1 Glycine max DREB2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525060.1 | 5e-94 | ethylene-responsive transcription factor ERF060 | ||||
Swissprot | Q8H1E4 | 4e-47 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0B2P379 | 1e-119 | A0A0B2P379_GLYSO; Ethylene-responsive transcription factor RAP2-4 | ||||
STRING | GLYMA05G31370.1 | 2e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-49 | related to AP2 4 |
Publications ? help Back to Top | |||
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