PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01976.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 320aa    MW: 36240.8 Da    PI: 7.8427
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01976.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv +v+++G ++W++++++ g+ R++k+c++rw +yl
       KHN01976.1 14 KGPWTSEEDKKLVAYVEKHGHRNWRSVPAKAGLERCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.83.9e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eEd  +++++++lG++ W+ Ia++++ +Rt++++k++w++
       KHN01976.1  67 RGNFTMEEDHTIIQLHALLGNK-WSIIAAHLP-KRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.83965IPR017930Myb domain
SuperFamilySSF466891.69E-3211108IPR009057Homeodomain-like
SMARTSM007173.7E-151363IPR001005SANT/Myb domain
PfamPF002491.6E-171461IPR001005SANT/Myb domain
CDDcd001673.83E-121661No hitNo description
Gene3DG3DSA:1.10.10.607.8E-2665117IPR009057Homeodomain-like
SMARTSM007179.4E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129420.2366116IPR017930Myb domain
PfamPF002493.7E-1567110IPR001005SANT/Myb domain
CDDcd001671.57E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRIPCCEKV GLKKGPWTSE EDKKLVAYVE KHGHRNWRSV PAKAGLERCG KSCRLRWINY  60
LKPDIKRGNF TMEEDHTIIQ LHALLGNKWS IIAAHLPKRT DNEIKNYWNT NVKKRLIRMG  120
LDPITHKPIK TNTFEAYGGG HGQSEDNINM NHMAQWESAR IEAEARGSVF QAGSHSSHQP  180
QLILSKIPTQ PCFSSSDSLS TKRNTVYNMY ALVLATNHDP VLPVSTLSIP YWQTPSPVST  240
NIGRFTDTGS SLSYEENVNI TETSCQTQKI IEDYMLNSQD DDIMVAVEAF RTTRCESIQE  300
LFRGSNDVEG PNNDSFERNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-40AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184086.10.0transcription factor MYB106-like
SwissprotQ9LE632e-86MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0B2NXU60.0A0A0B2NXU6_GLYSO; Transcription factor MYB106
STRINGGLYMA02G12254.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.16e-86myb domain protein 106
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]