PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 238aa MW: 26823.2 Da PI: 9.1948 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.7 | 5.2e-41 | 63 | 137 | 4 | 78 |
STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ KHN01962.1 63 AEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 137 79**********************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-32 | 57 | 122 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.291 | 58 | 135 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-37 | 62 | 139 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-30 | 63 | 134 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MLDYEWGNPS TIMLTGNEDS SAAGSDQTHR QIFDHYASHT LIPDHFLHAP MHSTATTVAT 60 TTAEGCNADL SQAKHYHRRH KVCEFHSKAA TVIAAGLTQR FCQQCSRFHL LSEFDNGKRS 120 CRKRLADHNR RRRKTQQPTQ EIQKSQSSLE NVARSPPDSG AQSSSSVTVA VSPPDYFRAI 180 PKHEPFIYYF KLIVFLKRKG KLDPSIWIFP EIGPVWFSGG VVAAEHGRSG LYTFILEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 53 | 134 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01962.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF312229 | 1e-84 | KF312229.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134545.1 | 4e-73 | hypothetical protein PHAVU_010G056000g | ||||
Refseq | XP_027906991.1 | 4e-73 | squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A0B2P2P7 | 1e-179 | A0A0B2P2P7_GLYSO; Squamosa promoter-binding-like protein 8 | ||||
STRING | XP_007134545.1 | 1e-72 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6801 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 4e-45 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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