PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01949.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 384aa    MW: 42599.3 Da    PI: 9.9106
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01949.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.34.1e-2849136383
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssas 83 
                 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  i++l+ +       ++++++   + ++ss+as
  KHN01949.1  49 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLqfpqgfgQFQHPQTLLPFHDSSAAS 136
                 79*************************************************************5555555333332222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.28750108IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-2650169IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MMASSREGRQ AKQEGDTTNI DKFSQASSTS RQWSAFRNPR IVRVSRSFGG KDRHSKVCTI  60
RGLRDRRIRL SVPTAIQLYD LQDKLGLSQP SKVIDWLLEA TKFDIDKLPP LQFPQGFGQF  120
QHPQTLLPFH DSSAASHQLS LGPFCDASST FVRDGGIQNL MAKSRYWENI DSMSRLRGNK  180
EAEKGKWIKT SEQENHDQDG VVGGYNSLQV STQRLFPMRS SSTTTTTTHS LLPGLFNNSM  240
PYNSYNSEPS SLSLSQFGSH GLFPTQQVDP NPSSGNNGVQ FQSSFPLPSS GSQLFFGSSS  300
ATPSMFTTYA PFIAPSVDTD PRQFNHIQFL NSGSHILPHP PLIPSLHHSF NSHVRPFPEA  360
PFSSKLLDSN SSNRSQENHK GSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1855109155Putative transcription factor PCF6
5zkt_B6e-1855109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522291.20.0transcription factor TCP5
RefseqXP_028228995.10.0transcription factor TCP5-like
TrEMBLA0A445L0Y50.0A0A445L0Y5_GLYSO; Transcription factor TCP5
TrEMBLK7KKH40.0K7KKH4_SOYBN; Uncharacterized protein
STRINGGLYMA04G32324.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5