PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN01870.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 470aa MW: 51532.8 Da PI: 6.6248

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN01870.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	123	183	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s KHN01870.1 123 PDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 183 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	105	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	125	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MQENKDPAIK LFGQKIAFPG EADSQAIAGG ETGSPAMDVD KDEEDFGIGN PDKDEKDKDP 60 RAEKVSEKTK EADPPPDAAD SKTSEGIQNP NTPSIDEESA KSKNDKSEND QQENNNNKTL 120 KKPDKILPCP RCNSMDTKFC YYNNYNVNQP RYFCKACQRY WTAGGTMRNV PVGAGRRKNK 180 NSASHYRHIT ISEALQAARI DAPNGTHLLK QNGRVLSFGL DPPICDSMAS ILNLTAEKKG 240 SLNNNTRNGF HTIEDQRNKD NHNNNNNNGD DCSSASSITV SNEESGKSTS QESIMVPNSN 300 GFIHHVPCIS TLPWPYPFPS AAPAMCPPGF PMSFYPAAFW NIPWFPSQHS HHSAPTPRSP 360 SSGPNSPTLG KHSRDDDAEK QDHLQEESPS RQRNGSVLVP KTLRIDDPSE AAKSSIWATL 420 GIKNECVTGG GMFKGFQSKK DEKDHVVEAS PVLRANPAAL SRSLNFHENS

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MQENKDPAIK LFGQKIAFPG EADSQAIAGG ETGSPAMDVD KDEEDFGIGN PDKDEKDKDP  60
RAEKVSEKTK EADPPPDAAD SKTSEGIQNP NTPSIDEESA KSKNDKSEND QQENNNNKTL  120
KKPDKILPCP RCNSMDTKFC YYNNYNVNQP RYFCKACQRY WTAGGTMRNV PVGAGRRKNK  180
NSASHYRHIT ISEALQAARI DAPNGTHLLK QNGRVLSFGL DPPICDSMAS ILNLTAEKKG  240
SLNNNTRNGF HTIEDQRNKD NHNNNNNNGD DCSSASSITV SNEESGKSTS QESIMVPNSN  300
GFIHHVPCIS TLPWPYPFPS AAPAMCPPGF PMSFYPAAFW NIPWFPSQHS HHSAPTPRSP  360
SSGPNSPTLG KHSRDDDAEK QDHLQEESPS RQRNGSVLVP KTLRIDDPSE AAKSSIWATL  420
GIKNECVTGG GMFKGFQSKK DEKDHVVEAS PVLRANPAAL SRSLNFHENS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN01870.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028229079.1	0.0	cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-126	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0B2NXU5	0.0	A0A0B2NXU5_GLYSO; Dof zinc finger protein DOF3.3
STRING	GLYMA04G33410.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-125	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]