PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01836.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 286aa MW: 32957.3 Da PI: 10.1521 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66 | 5.4e-21 | 26 | 114 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++d+l +g l+lp +f++++g k+ s t+ l+ ++g +W+v+l +k++gr+++++GWk+Fv+ + L g +vFk+dg +f+++v +f+ KHN01836.1 26 IMHPDNLLQGKLRLPAEFVNKYG--KHLSNTMFLKLPNGAEWRVNL--EKRDGRVWFQEGWKKFVEHHSLAHGHLLVFKYDG--TFHFHVLIFDP 114 468999999*************9..45999****************..*******************************987..67779*99986 PP | |||||||
2 | B3 | 47.3 | 3.7e-15 | 196 | 283 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 + +++++ ++lpk+ ++ + g +++ ++l rsW+vkl + k++++++++++W F+++n+LkegD + F+l ++ ++ ++v++ r KHN01836.1 196 K--SSSKQHMYLPKDSLKGYikG----GEQYVKLLV-GERSWRVKLVHYKNRSSCFFSANWPAFARENDLKEGDACWFQLLNSsDDIVMNVTISR 283 3..3344459*******988632....334566655.77****************************************8877577777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-27 | 17 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.51E-27 | 18 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.94E-21 | 22 | 113 | No hit | No description |
PROSITE profile | PS50863 | 14.438 | 22 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-20 | 23 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-18 | 26 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.392 | 188 | 285 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-16 | 190 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.54E-12 | 190 | 283 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-15 | 190 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.7E-9 | 191 | 285 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-13 | 194 | 283 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MTSKLNHRDD GSNGDSASKP IHFLRIMHPD NLLQGKLRLP AEFVNKYGKH LSNTMFLKLP 60 NGAEWRVNLE KRDGRVWFQE GWKKFVEHHS LAHGHLLVFK YDGTFHFHVL IFDPSANEID 120 YPVNKANHKR VRISSEEIQP PTTCKTSGNK RSNSNLQDNA FHQKVRDHKG SRYESPSEGK 180 RNMEAAGSIS FTVRMKSSSK QHMYLPKDSL KGYIKGGEQY VKLLVGERSW RVKLVHYKNR 240 SSCFFSANWP AFARENDLKE GDACWFQLLN SSDDIVMNVT ISREGH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01836.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028247196.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0B2NXI1 | 0.0 | A0A0B2NXI1_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
STRING | GLYMA08G44640.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-35 | B3 family protein |
Publications ? help Back to Top | |||
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