PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN01727.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 676aa MW: 75639.3 Da PI: 6.7072 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.9e-16 | 326 | 385 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g KHN01727.1 326 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 385 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46 | 1.3e-14 | 430 | 479 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g KHN01727.1 430 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 479 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-16 | 326 | 395 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-13 | 326 | 385 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.63E-22 | 326 | 393 | No hit | No description |
PROSITE profile | PS51032 | 19.203 | 327 | 393 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-29 | 327 | 399 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-16 | 327 | 394 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 328 | 339 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-17 | 428 | 488 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.03E-24 | 428 | 489 | No hit | No description |
SMART | SM00380 | 2.0E-33 | 429 | 493 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-18 | 429 | 487 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.151 | 429 | 487 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-9 | 430 | 479 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 469 | 489 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 676 aa Download sequence Send to blast |
MKSMENDDTV DLNNQNNNWL GFSLSPQMNN NNIGVSTHTQ PSSAAAEVVP TSFYHTTPLS 60 SYGFYYGLEA ENVGLYSALP IMPLKSDGSL YGMEAVSRSQ AQAMATTSTP KLENFLGGEA 120 MGTPHHHYEC SATETMPLSL DSVFYNQPSR RDQNNNQTYQ NHVQHISTQQ QQQQELQAYY 180 STLRNHDMML EGSKQSQTSE NNNNNLQVQN MGDDAVSVPV AGLKSWGVRN FQASHAHESK 240 MIVPHHVEEN GGESGSIGSM AYGDLQSLSL SMSPSSQSSC VTSSHRASSA VIDSAAMDTK 300 KRGSEKVDQK QIVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ 360 VYLGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLENYQNE LEEMKNMTRQ EYVAHLRRKS 420 SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGG 480 NAVTNFDITR YDVEKIMASS NLLSSELARR NQETTDNGTQ YIDQNHNKPS AYEDTQEAAI 540 LMHQKSCETQ NDQWKMVLYQ QSSQQLEQNI PPRIESDRTN QSFSVALENM FHQEVEESSK 600 VRTHVSNPSS LATSLSSSRE CSPERTSLPM LSGVPSTSSK LLATNPNNVN SWDPSPHLRP 660 ALTLPQMPVF AAWTDA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN01727.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC235191 | 0.0 | AC235191.1 Glycine max strain Williams 82 clone GM_WBb0012A18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028208833.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X4 | ||||
Swissprot | Q84Z02 | 1e-145 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A445G7E0 | 0.0 | A0A445G7E0_GLYSO; AP2-like ethylene-responsive transcription factor CRL5 isoform C | ||||
STRING | GLYMA17G17010.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-131 | AP2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|