PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01702.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 373aa    MW: 41508.4 Da    PI: 7.2215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01702.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13201248355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++Le A++Y+k+Lq
  KHN01702.1 201 QDHVIAERKRREKLSQRFIALSAIVPGL-----KKMDKATVLEDAIKYVKQLQ 248
                 6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.777198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11201248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17202258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16202258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.76E-13203252No hitNo description
SMARTSM003534.2E-15204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMQISSNMYM PEFGMEDPTL FHQYPMDSSS ALFQLEDLDF ESFSASPKNS SSHNKRLFNS  60
ESTQNSFHKS PHEQYSVAPP RPTKQNKTVM STTWSAYNAH HHHHDMVAPK ASSSSSSKII  120
SFDQHSNASS VISQQLYNNV DAAAKVKKPK IETGYGENLD FSAAAAAASQ SICDNNSFLD  180
HYDNQDKKAA ASTTRNPTQA QDHVIAERKR REKLSQRFIA LSAIVPGLKK MDKATVLEDA  240
IKYVKQLQER VKTLEEQAVD KTVESAVFVK RSVVFAGVDS SSSDENSDQS LPEMEARISG  300
KEVLIRIHCD KNSGGAAAIL RELEKHYLTV QSSSFLPFGN NTLDITIVAK MNNDYCLTAK  360
DLIRSLSQCL RQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERKRRE
2207212RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01702.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209709.10.0transcription factor bHLH25-like
SwissprotQ9T0721e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A445G7C40.0A0A445G7C4_GLYSO; Transcription factor bHLH25 isoform A
STRINGGLYMA17G16741.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-53bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]