PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN01701.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 319aa MW: 35166.1 Da PI: 7.6264

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN01701.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7e-12	132	179	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er RR++i +++ L l+P + kK++K+++L +A++Y+k+L+ KHN01701.1 132 QDHIIAERMRREKISQKLIALSALIPDL-----KKMDKVSVLGEAIRYVKQLK 179 5699**********************.....9***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.627	129	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-16	132	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-9	133	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-15	133	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.29E-11	134	183	No hit	No description
SMART	SM00353	1.0E-12	135	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MGQSDIKVDD VNGTLASPHD VATALLEKNQ QSSFSTVESL SSAAESGLER PFKLPKIEQL 60 SQKTASSSTP SSYILSFDNT NPPPVTVESA SKPGTKVLNL EKVLPSKNEP RRVVTQQNKK 120 MGSFAGSSHH TQDHIIAERM RREKISQKLI ALSALIPDLK KMDKVSVLGE AIRYVKQLKE 180 QVKLLEEQSK RKNEESVVFA KKSQVFPADE DVSDTSSNSC EFGNSDDIST KATLSLPEVE 240 ARVSKKSVLI RILCEKEKAV LVNIFREIEK LHLSVVNSSA LSFGSSVLDT TIVAEMEDEF 300 NMGVKELARN LRVGLMQFM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN01701.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028209707.1	0.0	transcription factor bHLH18-like
TrEMBL	A0A445G792	0.0	A0A445G792_GLYSO; Transcription factor bHLH25
STRING	GLYMA17G16730.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF455	34	164

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-55	bHLH family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]