PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN01653.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 370aa MW: 40964.1 Da PI: 6.02

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN01653.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	27.9	6.7e-09	45	81	4	40
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 ++ +C++CGn a+ C +e C+ CC + C+ hv KHN01653.1 45 NKPKCKQCGNVARSRCPYECCKSCCSRNQNPCHIHVL 81 5679*******************************93 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.9E-6	48	81	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MATPNNNNNN PNIINNNNIA TAKPGTLGVG VGAVPTPPKS QRGHNKPKCK QCGNVARSRC 60 PYECCKSCCS RNQNPCHIHV LKANSTFPDK APSSGASPLD QQSLDPPQST SAGRVASLRQ 120 LSNSFAQFNN LHLSLRSKKP LTRKDAAAIN EWRFAKIKEY KERNVEVENE AFDRYMQNVD 180 LLEEVLAVKS LDENVPSALE SNPTTMESNE AMIPGLKLQL RSNSMRSDGL RMRIQQIVDE 240 GLKKLKKSAV DGDINESIDG ESNEASKRGK GIERLSAISD LMEKINKART EEDLKPCLEM 300 KTQLFNLDEG ASVKDLQDNE MHENETVVTD VVPAEGLDYS LPKFVTTTEI DLETLNTIDK 360 HFSTQDIEQL

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MATPNNNNNN PNIINNNNIA TAKPGTLGVG VGAVPTPPKS QRGHNKPKCK QCGNVARSRC  60
PYECCKSCCS RNQNPCHIHV LKANSTFPDK APSSGASPLD QQSLDPPQST SAGRVASLRQ  120
LSNSFAQFNN LHLSLRSKKP LTRKDAAAIN EWRFAKIKEY KERNVEVENE AFDRYMQNVD  180
LLEEVLAVKS LDENVPSALE SNPTTMESNE AMIPGLKLQL RSNSMRSDGL RMRIQQIVDE  240
GLKKLKKSAV DGDINESIDG ESNEASKRGK GIERLSAISD LMEKINKART EEDLKPCLEM  300
KTQLFNLDEG ASVKDLQDNE MHENETVVTD VVPAEGLDYS LPKFVTTTEI DLETLNTIDK  360
HFSTQDIEQL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN01653.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006600880.1	0.0	uncharacterized protein LOC100816049 isoform X1
Refseq	XP_028208686.1	0.0	uncharacterized protein LOC114391887 isoform X1
TrEMBL	A0A0R0FDP9	0.0	A0A0R0FDP9_SOYBN; Uncharacterized protein
STRING	GLYMA17G16100.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7690	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	2e-91

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]