PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 31113.7 Da PI: 9.3653 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.5e-12 | 128 | 174 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR++i + f L ++P + kK +Ka++L+ A++Y+k+Lq KHN01615.1 128 DHIMSERKRRENIAKLFIALSAVIPVL-----KKTDKASVLKTAIDYVKYLQ 174 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.833 | 124 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 128 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.27E-10 | 129 | 178 | No hit | No description |
Pfam | PF00010 | 1.1E-9 | 129 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-16 | 129 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-13 | 130 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MHSLVEVFKG ENLVQQEKSC KSHPCDSNIT KESTTILLRN PINDSSSLEK NPGFDNRSSL 60 KQHASQDEPL FSSSSMPYTL SFEDSTAVPY VLNKTCQCYH GENSKETQEE PKNNRKSKRG 120 RSSSEIQDHI MSERKRRENI AKLFIALSAV IPVLKKTDKA SVLKTAIDYV KYLQKRVKDL 180 EEESKKRKVE YAVCFKTNKY NIGTVVDDSD IPINIRPKIE ARVSGKDALI KVMCEKRKDI 240 VAKILGKLAA LNLSIVCCNV LPFANSALNI TCIAQGQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 137 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01615.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096818 | 0.0 | BT096818.1 Soybean clone JCVI-FLGm-15B24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240220.1 | 0.0 | uncharacterized protein LOC100799087 | ||||
Refseq | XP_028240189.1 | 0.0 | transcription factor bHLH18-like isoform X1 | ||||
TrEMBL | A0A0B2NX29 | 0.0 | A0A0B2NX29_GLYSO; Transcription factor bHLH25 | ||||
STRING | GLYMA07G13423.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16348 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-35 | bHLH family protein |
Publications ? help Back to Top | |||
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