PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01494.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 457aa    MW: 52328.6 Da    PI: 5.7858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01494.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.48.9e-47131421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                 +p+GfrF+Ptdeelv++yLk+k+ ++++++ ++i+e+d++kvePwd p +  +k+++ ew+fFs+ d ky ++kr nr+tk+gyWk+tg+d++v+   +
  KHN01494.1  13 MPVGFRFRPTDEELVNYYLKHKLLADDFPV-HIIPEIDLCKVEPWDVPeRsVIKSDDPEWFFFSPVDYKYLKSKRFNRTTKRGYWKTTGNDRNVKIPgT 110
                 699***************************.89**************95347777888*************************************9967 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++++g+kktLvf++gr p+g+kt+Wv+hey++
  KHN01494.1 111 NNVIGTKKTLVFHEGRVPRGVKTNWVIHEYHA 142
                 788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-5011147IPR003441NAC domain
PROSITE profilePS5100547.66613164IPR003441NAC domain
PfamPF023652.0E-2514141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
TMENNIISIC DHMPVGFRFR PTDEELVNYY LKHKLLADDF PVHIIPEIDL CKVEPWDVPE  60
RSVIKSDDPE WFFFSPVDYK YLKSKRFNRT TKRGYWKTTG NDRNVKIPGT NNVIGTKKTL  120
VFHEGRVPRG VKTNWVIHEY HAVTSHESQV DIIPGVDMEE IFQAVDRAEK FSPPVQRSQT  180
GIGLEDFFAN SPLFDAHFGS ENINMQTSLE VTDDEELVNS FWVDDEEFVI NEERRHCFVN  240
SSTQPKSFRR VYNESSEIDA EVVSNLNEHI SADEYPALKM FQSSYDVRGG TSRLASNHKA  300
NKEKKESIIP DDFWAVETSS CDSTADEPIE ISSSPSTPTR MKNQCHLRPD KFILQRTVAG  360
RPQIQKQVSN NAVSHVEVRK ELLTVKSEKD QKNAQNASLR GNFKNKSQQS SDVNNNGSFF  420
YMETASNRSL FPRSVYLVNV VIGILLLIVI SWDVLSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-371214114139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01494.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150426e-73AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529865.10.0NAC domain-containing protein 69
TrEMBLA0A445JSF30.0A0A445JSF3_GLYSO; NAC domain-containing protein 62 isoform A
STRINGGLYMA07G05351.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-51NAC domain containing protein 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]