PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 542aa MW: 59982.7 Da PI: 5.7828 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 248.2 | 3.2e-76 | 158 | 533 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL cA a++ g+l+++q+lL l+elasp+gd+++Rlaa+ ++AL ++l++s +++++ + +++ + + l f+evsP++ f + +aN KHN01415.1 158 EQLLNPCAAAITGGNLNRVQHLLYVLHELASPTGDANHRLAAHGLKALTQHLSSSPTSTSSGSITFASA--EPRFFQKTLLKFYEVSPWFSFPNNIANA 254 689***************************************************555555444333333..23333333344***************** PP GRAS 101 aIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrle 187 Il+ + ++ +++Hi+D+++s+G+QWp++l+aL+ R+ ++pp +R+T+v +++s+ + +rL fA++++v++++n l l+ KHN01415.1 255 SILQVLGEDtdnsRTLHILDIGVSHGMQWPTFLEALSRRAgGPPPLVRLTVVTASSSTendtpfcIGPPGDNFSSRLLGFAQSMNVNLQINKLDNCPLH 353 ***9876655555999************************55666*******99888888888877788999********************9777*** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpreseeri 283 +l+ ++ + +p+E +V+ +++lh+l ++ ++er+++L ++++++Pk v+++++++ + ++F+++f++ +ey + ++ds+++ + + r KHN01415.1 354 SLNAQSVDASPDEIFVVCAQFRLHQLN---HNAPDERSKFLTVLRNMEPKGVILSDNNLGCccnCCGDFATGFSRRVEYLWRFLDSTSSAF----KGRE 445 **************************8...66666678********************6653323579*******************6665....5566 PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + Er++++ e+ ++++++ + +e +ekW er++eaGF + ++e+a + ++llrk++ +++++ve+++ s+ l Wk++++ ++S W+ KHN01415.1 446 SEERRVMEGEAAKALTNQRET----NEGKEKWCERMKEAGFVEEVFGEDAIDGGRALLRKYEsNWEMKVEDDNRSVGLWWKGQSVSFCSLWK 533 666666666688888776665....9************************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.675 | 131 | 512 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-73 | 158 | 533 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MIMEPNPTPD HSLDWFEGSV SYFPPFLDYP YNSSDIQEYQ LWEQDIASNY QTDTNTSSPN 60 ATNIVTITTP LETCDSNNLP LSDLPKKRSA TDESSPKPPQ NHKHKKIKSK PRNNEADNGD 120 AEATTTTTAT VRKSGGNKKG GAKANGNNCN NKDGRWAEQL LNPCAAAITG GNLNRVQHLL 180 YVLHELASPT GDANHRLAAH GLKALTQHLS SSPTSTSSGS ITFASAEPRF FQKTLLKFYE 240 VSPWFSFPNN IANASILQVL GEDTDNSRTL HILDIGVSHG MQWPTFLEAL SRRAGGPPPL 300 VRLTVVTASS STENDTPFCI GPPGDNFSSR LLGFAQSMNV NLQINKLDNC PLHSLNAQSV 360 DASPDEIFVV CAQFRLHQLN HNAPDERSKF LTVLRNMEPK GVILSDNNLG CCCNCCGDFA 420 TGFSRRVEYL WRFLDSTSSA FKGRESEERR VMEGEAAKAL TNQRETNEGK EKWCERMKEA 480 GFVEEVFGED AIDGGRALLR KYESNWEMKV EDDNRSVGLW WKGQSVSFCS LWKLDGNDQS 540 ST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 4e-40 | 151 | 533 | 81 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-40 | 151 | 533 | 27 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-40 | 151 | 533 | 27 | 419 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01415.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529836.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Refseq | XP_028239200.1 | 0.0 | nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A445JS21 | 0.0 | A0A445JS21_GLYSO; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | I1KHC2 | 0.0 | I1KHC2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G04430.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-158 | GRAS family protein |
Publications ? help Back to Top | |||
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