PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRF | ||||||||
Protein Properties | Length: 359aa MW: 40831 Da PI: 8.4531 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79 | 4.4e-25 | 76 | 120 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e KHN01405.1 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 120 79****************************************985 PP | |||||||
2 | QLQ | 52.8 | 1.2e-18 | 10 | 45 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+FT +Q+q+L++Q+l++Ky++ + P+Pp+L+ i+ KHN01405.1 10 SPFTQTQWQELEHQALVFKYMVTGTPIPPDLIYSIK 45 89*****************************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.3E-11 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.896 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.7E-14 | 11 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.325 | 76 | 120 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.3E-21 | 77 | 119 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MMSASARNRS PFTQTQWQEL EHQALVFKYM VTGTPIPPDL IYSIKRSLDT SISSRLFPHH 60 PIGWGCFEMG FGRKVDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEV 120 SSAISTATNT SQTIPSSYTR NLSLTNPNMT PPSSFPFSPL PSSMPIESQP FSQSYQNSSL 180 NPFFYSQSTS SRPPDADFPP QDATTHQLFM DSGSYSHDEK NYRHVHGIRE DVDERAFFPE 240 ASGSARSYTE SYQQLSMSSY KSYSNSNFQN INDATTNPRQ QEQQQQQHCF VLGTDFKSTR 300 PTKEKEAETA TGQRPLHRFF GEWPPKNTTD SWLDLASNSR IQTGDDPASS SLLSLSHPF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01405.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235913 | 0.0 | AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529835.1 | 0.0 | growth-regulating factor 5 | ||||
Refseq | XP_028239418.1 | 0.0 | growth-regulating factor 5-like | ||||
TrEMBL | A0A445JS10 | 0.0 | A0A445JS10_GLYSO; Growth-regulating factor 1 isoform A | ||||
TrEMBL | I1KHB3 | 0.0 | I1KHB3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G04290.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9744 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-65 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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