PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01404.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 576aa    MW: 63375.5 Da    PI: 6.8226
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01404.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-11246302155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aaka++ a+ k++g
  KHN01404.1 246 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAAIKYWG 302
                 78*******************433.44555535555.779999**************98 PP
2AP248.12.9e-15345396155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KHN01404.1 345 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 396
                 78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-14246312IPR016177DNA-binding domain
CDDcd000184.96E-18246312No hitNo description
PfamPF008471.4E-8246302IPR001471AP2/ERF domain
SMARTSM003801.1E-22247316IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-12247311IPR001471AP2/ERF domain
PROSITE profilePS5103216.924247310IPR001471AP2/ERF domain
PRINTSPR003671.3E-6248259IPR001471AP2/ERF domain
CDDcd000189.88E-25345406No hitNo description
SuperFamilySSF541719.15E-18345406IPR016177DNA-binding domain
PfamPF008475.9E-10345396IPR001471AP2/ERF domain
SMARTSM003803.6E-34346410IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18346404IPR001471AP2/ERF domain
PROSITE profilePS5103219.006346404IPR001471AP2/ERF domain
PRINTSPR003671.3E-6386406IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDEEFE RENQERGAGG GGGYHHPSPS SHPHLSVMPL RSDGSLCVAD  60
SFSHSAASQE WRYDSAIGGG NSNEKGPKLE DFLGGYSNSP TKVFCQDTQH DQNQSQNNVS  120
KINVNVAPSF CTNAEIETGE SLANPYPHQS FHAYNDNSHA LIPTNGMYKS WLAQTQFSSD  180
GKPSTEANGC NFQSLSLSMS PGMQNGVGAI SSVQVSEDSR KRVMAKSHAR EPVPRKSIDT  240
FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ GGYDKEEKAA KAYDLAAIKY  300
WGPTTHINFP LSTYEKELEE MKHMTRQEFV ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ  360
ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGTSAV TNFDISRYDV KRICSSSTLI  420
AGDLAKRSPK ESPALVPAED FNSCGSSMPP ASQPPPLAIT DGEHSDELSN MMWNANSDVH  480
AQNENGANIN NNVTESSSQQ VSPSSNKDAL NPQSPKCSVG LPNEFGVSGA DYGHGYFTLD  540
GPKYDDGNNE NDHMSTNRLG NLGLVNQVPM FALWNE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583159.10.0AP2-like ethylene-responsive transcription factor AIL1
RefseqXP_028239191.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-135AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A445JRV50.0A0A445JRV5_GLYSO; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLK7KZJ10.0K7KZJ1_SOYBN; Uncharacterized protein
STRINGGLYMA07G04265.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-133AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]