PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01301.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22489.3 Da PI: 4.6021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.2 | 9.5e-06 | 41 | 81 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++R +++ ++f L +P +K +K +iL A Y+k+Lq KHN01301.1 41 KKRKRELAERFLALSATIPGF-----TKTDKTSILANASSYVKQLQ 81 89999***************8.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.232 | 31 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-4 | 38 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 41 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-11 | 41 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.24E-5 | 41 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEESGENWPS DNSYLDEVND EFGSEDEEGG SFSGMGETDR KKRKRELAER FLALSATIPG 60 FTKTDKTSIL ANASSYVKQL QQRVRELEQE VQSNVSSNEG ATSSCEVNSS NDYYSGGGPN 120 EILPEVKVRV LQKDVLIIIH CEKQKGIMLK ILSQLENVNL SVVNSSVLRF GKITLDITII 180 AKMGEGYKMT VDELVKTLRV AIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 44 | RKKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01301.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094233 | 0.0 | BT094233.1 Soybean clone JCVI-FLGm-18I24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240111.1 | 1e-147 | uncharacterized protein LOC100804953 | ||||
Refseq | XP_028239035.1 | 1e-147 | transcription factor bHLH25-like | ||||
TrEMBL | A0A445JRD5 | 1e-145 | A0A445JRD5_GLYSO; Transcription factor bHLH25 isoform A | ||||
TrEMBL | C6T9Q9 | 1e-145 | C6T9Q9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G03100.1 | 1e-146 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14605 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-22 | bHLH family protein |
Publications ? help Back to Top | |||
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