PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01299.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 269aa    MW: 30565.2 Da    PI: 8.9152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01299.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12107152555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h + Er+RR++i ++f  L   +P +     kK++Ka++L++A +Y+++Lq
  KHN01299.1 107 HVMSERKRRQDIAEKFIALSATIPGL-----KKVDKATVLREALNYMRQLQ 152
                 8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15104162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.70E-10107156No hitNo description
Gene3DG3DSA:4.10.280.108.4E-15107161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10107152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MLSSLPDMME DSWENWLSHL GMNDDFSCTN AVSSEEMVRL NNDSSNVVAA IGPKVEYTDS  60
YLKSSEEKLG SCYWRKRGVE NHELEAKARD NERGTKRART SSETQYHVMS ERKRRQDIAE  120
KFIALSATIP GLKKVDKATV LREALNYMRQ LQQRIAVLEK GSNNKSIKSL IITKSRLCSA  180
SCETNSNEVL PQVEARGLEK EVLIRIYCEK RKDIMLKLLA LLKDVHLSIA SSSILQFGNS  240
ILNIIIIAQM SEKYNLTVND LVKTLKQIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150423e-52AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529791.20.0transcription factor bHLH25
RefseqXP_028240821.10.0transcription factor bHLH25-like
TrEMBLA0A445JRD10.0A0A445JRD1_GLYSO; Transcription factor bHLH25
TrEMBLK7KZB50.0K7KZB5_SOYBN; Uncharacterized protein
STRINGGLYMA07G03081.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14964813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-41bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]