PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01298.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 341aa MW: 38232.8 Da PI: 6.0641 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.8 | 1.7e-12 | 162 | 207 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR+++ ++f L +P + K +Ka++L+ A++Y+k+Lq KHN01298.1 162 HIMAERRRRQELTERFIALSATIPGL-----NKTDKASVLRAAIDYVKQLQ 207 999**********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-17 | 156 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.434 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-12 | 162 | 211 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-17 | 162 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-10 | 162 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-15 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEESWENWHL HMETDCENDF LGKCHGTDDD EFFRDILQQP PPAAFSSESE SDHSFLAVQN 60 TSSFPNDGAV LSPRNYLVKS SSSNSLVSQN ASKRPRRLSS PRTYILSFDN STMVPATPET 120 RPRSSNNSPL PAKRALESPG PVARRPNQGA KKIRTSSQTI DHIMAERRRR QELTERFIAL 180 SATIPGLNKT DKASVLRAAI DYVKQLQERV QELEKQDKKR STESVIFIKK PDPNGNDEDT 240 TSTETNCSIL PEMEARVMGK EVLIEIHCEK ENGVELKILD HLENLHLSVT GSSVLPFGNS 300 ALCITITTQM GDGYQMTVND LVKNLRQLFS KSHVLSDSDP Y |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01298.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028239034.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A445JRA5 | 0.0 | A0A445JRA5_GLYSO; Transcription factor bHLH25 isoform A | ||||
STRING | GLYMA07G03060.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13110 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-44 | bHLH family protein |
Publications ? help Back to Top | |||
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