PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Whirly | ||||||||
Protein Properties | Length: 263aa MW: 29740.2 Da PI: 10.0262 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 136.3 | 1.4e-42 | 81 | 224 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerk..ydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkve 97 svy k+ l+v ++ p+fe+ sg++k++++G ++l++a++++ + ydW++kq f+ls+ e+++l+ l++++s ef h++ + +sne +vrk+lkve KHN01174.1 81 SVYTRKGVLTVTPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEpiYDWNQKQIFSLSVSEMGTLITLGARDSWEFSHETVKLKSNETEVRKVLKVE 179 79***************************************9976444*************************************************** PP Whirly 98 PlpdGsGlfvnlsvtnslvkg...nesfsvPvskaefavlrsllv 139 Pl d +G++++lsv+++ v+ ++++s+Pv++ae avlr l++ KHN01174.1 180 PLLDATGHLFSLSVQKKPVNMegiQKNISLPVTRAELAVLRVLFN 224 ****************98875223799**************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.2E-57 | 72 | 244 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.73E-49 | 74 | 263 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.9E-48 | 82 | 221 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAQVQSITLK HLSLPTHTFV PPKFNIPLNR NLSFTPKFTF STSLSVRCYH PNLVQPKPFP 60 PLPQRPPVAE LPQQRVYVGY SVYTRKGVLT VTPRPPEFES KSSGAFKVSK EGYVVLQFAP 120 SVGADEPIYD WNQKQIFSLS VSEMGTLITL GARDSWEFSH ETVKLKSNET EVRKVLKVEP 180 LLDATGHLFS LSVQKKPVNM EGIQKNISLP VTRAELAVLR VLFNYIMPYL LGWNAFGNSI 240 KPEVYSQVNN TNSRYGADNE WNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 8e-70 | 75 | 262 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 8e-70 | 75 | 262 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 8e-70 | 75 | 262 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 8e-70 | 75 | 262 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01174.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517771.1 | 0.0 | single-stranded DNA-binding protein WHY1, chloroplastic isoform X1 | ||||
Refseq | XP_028230539.1 | 0.0 | single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 | ||||
Swissprot | Q9M9S3 | 7e-76 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A445LYQ5 | 0.0 | A0A445LYQ5_GLYSO; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | I1J5L3 | 0.0 | I1J5L3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G05000.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 3e-77 | ssDNA-binding transcriptional regulator |