PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00957.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 329aa    MW: 36301.1 Da    PI: 6.7881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00957.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027218240123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  KHN00957.1 218 HECSICGAEFTSGQALGGHMRRH 240
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.93E-8140163No hitNo description
PfamPF139122.0E-12140165IPR007087Zinc finger, C2H2
SMARTSM003550.25141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806141168IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SuperFamilySSF576672.93E-8213240No hitNo description
PfamPF139124.8E-13217242IPR007087Zinc finger, C2H2
SMARTSM003550.01218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723218240IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEAPEELSLG GSKDHTNIVK GKRTKRVRPQ SPMPFSITSN SSTGEGEKEE GCNNGDDDNN  60
NMKNEDINNI NSSPTSSAGL QDSTDEEEDM ANCLILLAQG QSRESPKHAE EDAGMNSAKY  120
SSRKFLEAAT LGSSRAGYYV YECKTCNRTY PSFQALGGHR ASHKKPKALM AIGLEKKQQH  180
LLSSDEEEFQ LKTNKSPFSL QLNTKGNLYS NNNKSKVHEC SICGAEFTSG QALGGHMRRH  240
RAPVGTTTPA TLSFTPLALE PEEDHPRKKR NVLNLDLDLN LPAPGDDHRE SKFAFASKQQ  300
QQQHQQPQQQ QQPQTSLVFP APALVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00957.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221188.10.0zinc finger protein ZAT5-like
TrEMBLA0A445F7D60.0A0A445F7D6_GLYSO; Zinc finger protein ZAT5
STRINGGLYMA20G33480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-65C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]