PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN00952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 465aa MW: 52083.4 Da PI: 7.2761 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.3 | 2.9e-53 | 34 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatg+d++v + ++ KHN00952.1 34 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVRH-DQ 130 579**************************9.99**************75348899999**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vglkktLvf++grap+g++t+Wvmheyrl KHN00952.1 131 RTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 161 9****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-60 | 31 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.396 | 34 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-27 | 36 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MGRETMCLST PPPTTATTTV NPVPPPPPAP PTSLAPGFRF HPTDEELVIY YLKRKVSGKS 60 FRFDAISEVD IYRSEPWDLA DKSRLKTRDQ EWYFFSALDK KYGNGGRMNR ATSKGYWKAT 120 GNDRPVRHDQ RTVGLKKTLV FHSGRAPDGK RTNWVMHEYR LVEEELERAG TGSSQPQDAY 180 VLCRVFHKNN IGPPNGQRYA PFIEEEWDDA SGMVPGADHV DNRSFAHQPR VEGNGGVLCA 240 EGRNGVVQDT QSFNKAPFDV NKLPIETQNL LAVCKRESMA EYPSPEKDDN NCKHMDDYPS 300 PQTDNPKPFS QIYKRRRHNL NSNNSNVSGD SVRTSQDPCS STITTAATAL PTATVAGTAT 360 NTAPKKHFLS ALVEFSLLES LESKDNLASI KAPDFDTENL ESSMPPSCAK FIKQMQSEMQ 420 KLSVEKETIR FEMMSAQAMI NILQSRIDVL SKENEDLKRM VAQNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-49 | 28 | 190 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-49 | 28 | 190 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-49 | 28 | 190 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-49 | 28 | 190 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-49 | 28 | 190 | 14 | 170 | NAC domain-containing protein 19 |
3swm_B | 7e-49 | 28 | 190 | 14 | 170 | NAC domain-containing protein 19 |
3swm_C | 7e-49 | 28 | 190 | 14 | 170 | NAC domain-containing protein 19 |
3swm_D | 7e-49 | 28 | 190 | 14 | 170 | NAC domain-containing protein 19 |
3swp_A | 7e-49 | 28 | 190 | 14 | 170 | NAC domain-containing protein 19 |
3swp_B | 7e-49 | 28 | 190 | 14 | 170 | NAC domain-containing protein 19 |
3swp_C | 7e-49 | 28 | 190 | 14 | 170 | NAC domain-containing protein 19 |
3swp_D | 7e-49 | 28 | 190 | 14 | 170 | NAC domain-containing protein 19 |
4dul_A | 6e-49 | 28 | 190 | 11 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-49 | 28 | 190 | 11 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN00952.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028222574.1 | 0.0 | NAC domain containing protein 50-like | ||||
Swissprot | Q9SQY0 | 1e-130 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A445F7C8 | 0.0 | A0A445F7C8_GLYSO; NAC domain containing protein 52 | ||||
STRING | GLYMA20G33430.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8189 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 1e-105 | NAC domain containing protein 50 |