PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN00898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 442aa MW: 49800.9 Da PI: 5.3281 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.9 | 4.2e-32 | 76 | 215 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWkatg 87 lp G++F+P+d+e++++ L+k +g++ ++++ + evd i++++P++Lp vk++ ++ +fF++ k+y+tg+rk+r+ + +W++tg KHN00898.1 76 LPIGVKFDPSDQEIIWHLLAKVGAGNSkphpfIDEFITTLEVDdgICYTHPQHLP-GVKQDGSSSHFFHRVIKAYNTGSRKRRKicgqdFGDVRWHKTG 173 699************888888777776776654444444444345**********.777888999******************74444444889***** PP NAM 88 kdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++k+v+ +g ++g+kk++v+y r k+ekt+Wvmh+y+l KHN00898.1 174 RTKPVIL-NGIQKGCKKIMVLYisPVRGGKSEKTNWVMHQYHL 215 *******.999***********6545888888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-39 | 61 | 234 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.813 | 76 | 234 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-14 | 77 | 215 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MLKTILNLSH LIASFSDLFP MAGPSWLVDK SRIATKIKSA SGTCGKVIWK SNPSRACPSC 60 HHVIDNSDVA QEWPGLPIGV KFDPSDQEII WHLLAKVGAG NSKPHPFIDE FITTLEVDDG 120 ICYTHPQHLP GVKQDGSSSH FFHRVIKAYN TGSRKRRKIC GQDFGDVRWH KTGRTKPVIL 180 NGIQKGCKKI MVLYISPVRG GKSEKTNWVM HQYHLGTEED EKDGEYAISK VFYQQQQVKF 240 GEKDDQDIPE ITEATTVKVD PATPKSVTPE PPRIEKRCSN LDLGQESHHI PQHPQTDYLD 300 DLQAVCEDLA KDDLLIVETQ NNEAIDNIEN NAEEDSKWWD SESQNLLSSQ QLVEALFLCD 360 DLLQSQSPKR DEENEHKKRP SLSVYADLGP EHLKKDIEEC QNLVLDPANV VPETPPSEFR 420 LSQLDFSSQD SFVSWCANKA ID |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN00898.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096579 | 0.0 | BT096579.1 Soybean clone JCVI-FLGm-20J20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028220771.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-163 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A445F766 | 0.0 | A0A445F766_GLYSO; Suppressor of gamma response 1 isoform A | ||||
STRING | GLYMA20G32690.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-154 | NAC family protein |