PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00895.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 347aa    MW: 38889.5 Da    PI: 6.6606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00895.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14163209354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  KHN00895.1 163 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 209
                 79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-12163209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-14164216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14164218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-5173212No hitNo description
CDDcd048738.45E-7246299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MIQEDQGQCS SQAINNYHQA YQEQLLLQQQ MQQQQQQQQQ NNDIFGGGLN MYPGGEVSQI  60
MHHHHHQPWS MTMPHHHHHH HQVHDPFLVP PQTSPYASLF NRRGPSLQFA YDHGSSSDHL  120
RIISESFVGP VVQPGSAPFG LQTELAKMTA QEIMEAKALA ASKSHSEAER RRRERINNHL  180
AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSLIAETS PVPTEADELT VVDEADEDGN  240
SVIKASLCCE DRSDLFPELI KTLKALRLRT LKAEITTLGG RVKNVLFITG EETDSSSSED  300
HSQQQQQCCI SSIQEALKAV MEKSVGDHHE SASANIKRQR TNIISMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958850.0BT095885.1 Soybean clone JCVI-FLGm-20E1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241119.10.0HLH and ACT domain-containing protein
RefseqXP_025983056.10.0HLH and ACT domain-containing protein isoform X1
RefseqXP_028220625.10.0transcription factor bHLH30-like
RefseqXP_028220626.10.0transcription factor bHLH30-like
SwissprotQ9S7Y15e-97BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A445F7120.0A0A445F712_GLYSO; Transcription factor bHLH30 isoform B
TrEMBLA0A445F7160.0A0A445F716_GLYSO; Transcription factor bHLH30 isoform A
TrEMBLC6TE650.0C6TE65_SOYBN; Uncharacterized protein
STRINGGLYMA20G32660.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]