PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN00882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 507aa MW: 55865.9 Da PI: 6.9115 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00052 | 404 | 436 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A+ YIk Lq KHN00882.1 404 DKITALQQIVSPF-----GKTDTASVLFEAIGYIKFLQ 436 7888889988887.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.642 | 386 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-9 | 401 | 452 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-8 | 401 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.42E-4 | 404 | 440 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MTEESAGNTV ATSITPFNWW YLQANSLSSW NDTNSTWNSQ PNPNSSSSCE EDISVSTSFT 60 NASNHSSLTV ESSRRLIEPP APSSNELMGE HASDNQLWSH VLSGVGSNGE LHNGQEIGEN 120 FLDALSSKSM TSTMFQPVCD YLKKLDHTSW EYNGPTSLNS FEKHLNGFSE AMIENNERLT 180 KLSNLVSTWS IAPPDPEVSS HFDPQTNNMS LSSNSMDHHF PQSEHFKQPF RDSTSSCSLG 240 GASRSSGVIP NCYDHDMKVK QEYHASEVPP GAVFGKTLNA NGFNSLSVGD SCKLYHGMPN 300 ISSCTRNFSD VISFNSRLGR PVIGVHSQKP SMKYLNVSES KKQGLQTPSP PIRTNVNGKG 360 EGTTREVKKK RSEESSDAML KKPKQDTSTA SSSKVQAPKV KLGDKITALQ QIVSPFGKTD 420 TASVLFEAIG YIKFLQEQVQ LLSNPYLKAN THKDPWGSLD RKDKEDTKLD LRSRGLCLVP 480 TSCTPLVYRD SSGPDYWTPA YRGCLYR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN00882.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092677 | 0.0 | BT092677.1 Soybean clone JCVI-FLGm-11D9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237599.2 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding protein | ||||
Refseq | XP_028220531.1 | 0.0 | transcription factor bHLH111-like isoform X1 | ||||
TrEMBL | A0A445F6Z6 | 0.0 | A0A445F6Z6_GLYSO; Transcription factor bHLH111 isoform A | ||||
TrEMBL | I1NHJ5 | 0.0 | I1NHJ5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G32520.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10116 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 3e-64 | bHLH family protein |
Publications ? help Back to Top | |||
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