PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00879.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 500aa    MW: 54899.9 Da    PI: 8.6555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00879.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05628123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F r  nL+ H r H
  KHN00879.1  6 FICEVCNKGFQREQNLQLHRRGH 28
                89*******************88 PP
2zf-C2H212.80.0003783105123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  KHN00879.1  83 WKCEKCSKKYAVQSDWKAHSKTC 105
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.4E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.23E-7528No hitNo description
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PfamPF121712.4E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.23E-778103No hitNo description
SMARTSM0035514083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTT KEPKRKVYLC PEPTCVHHDP  60
SRALGDLTGI KKHYYRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY RCDCGTLFSR  120
RDSFITHRAF CDALAQESAR FPSGLNSLGT HLFGTNHTTS LSLSQVGNQL SQVQKQNQTA  180
TTNSIFLLGN NVGAAATKFE HLIPPLNQSS FGHSPQSMPS SAFFMNNNTN QSLFEEHHSQ  240
HGPLFSTKQL QGLMQLQDLQ GNTNNSDSSS VAAPNNSNLF NLSFFPSSNI STGTIIPDQF  300
NNISGGDQGT TTTTTLYGNS IENVSSPHVG SSFSSIFGNS MENVSSPHMS ATALLQQAAQ  360
MGSTTTTTTN CSSLLRGMCT NNGCKAENDH HHNLQGLMNS IANGNTSLFG SMQGNENNLC  420
GFHNVDESNN KLPQNLSVNF GGSDKLTLDF LGVGGMMRNM SSGGFSQREQ QQHDIGTMSS  480
LDHDLKSAQP NRHFGKSTLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3679143367Zinc finger protein JACKDAW
5b3h_F3e-3679143367Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555448.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_014628357.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_028221909.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_028221910.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_028221911.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A445F7330.0A0A445F733_GLYSO; Protein indeterminate-domain 4, chloroplastic isoform A
TrEMBLI1NHJ10.0I1NHJ1_SOYBN; Uncharacterized protein
STRINGGLYMA20G32480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.26e-87indeterminate(ID)-domain 4