PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00843.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 242aa    MW: 26343.1 Da    PI: 9.9726
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00843.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.3e-18148181134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  KHN00843.1 148 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 181
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-16142192IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.583142178IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15146205No hitNo description
Gene3DG3DSA:3.30.50.106.0E-15146179IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-12147204No hitNo description
PfamPF003201.4E-15148181IPR000679Zinc finger, GATA-type
PROSITE patternPS003440148173IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNKVEEPSCT TKEDSVNTQF HTSSPVSVLE SSSSCSGGKT FPLSSPEIYI PVPCGRTRSK  60
RPRPATFNPR PAMNLISPAS SFVGENMQPN VISSKSSSDS ENFAESQLVP KMPKQASGEP  120
KKKKKVKLPL PLVPADNNQN ASQPVRKCMH CEITKTPQWR AGPMGPKTLC NACGVRYKSG  180
RLFPEYRPAA SPTFCPSVHS NSHKKVLEMR CRGIDKSGFA INSAASPELI PNTNSSLTLE  240
YM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560RTRSKR
25963KRPRP
3119125PKKKKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221878.11e-177GATA transcription factor 8-like isoform X1
SwissprotQ9SV301e-40GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A445F6S11e-176A0A445F6S1_GLYSO; GATA transcription factor 9 isoform C
TrEMBLA0A445F6X81e-175A0A445F6X8_GLYSO; GATA transcription factor
TrEMBLA0A445F7521e-174A0A445F752_GLYSO; GATA transcription factor
STRINGGLYMA20G32050.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-42GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]