PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN00809.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 509aa MW: 56805.6 Da PI: 6.1053

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN00809.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.5e-07	258	279	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H KHN00809.1 258 FCTICGKGFKRDANLRMHMRGH 279 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.64E-5	256	279	No hit	No description
PROSITE profile	PS50157	11.489	257	284	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	257	279	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.7E-5	257	281	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	259	279	IPR007087	Zinc finger, C2H2
SMART	SM00355	53	306	339	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	344	366	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MDPKGSLCAT RSSSLTSPGN GLQTNLSSDP PSFYGVRIES PFEEFIQPSP PTQSVLPGES 60 NTDIDIPDQE NCPLSDSSHT SKLQDWNPSA MLNNLSFLEV KIHQLRDLVH VIVSKKCQPF 120 GQPHELVTQE QQLITADLTS IIVQLISTAG SLLPSVRHTL TNANPLVGQL DQLHGINLPF 180 ESEPSSGIRP QNNSGNKLFD QSIQNDLPNK LEMEQNYNME EHEPKDEEDV DEGENLPPGS 240 YEILQLEKEE ILAPHTHFCT ICGKGFKRDA NLRMHMRGHG DKYKTPAALA KPHKESGSEP 300 KLIKRYSCPY NGCKRNKDHK KFQPLKTILC VKNHYKRTHC DKSYTCSRCN TKKFSVMADL 360 KTHEKHCGKD KWLCSCGTTF SRKDKLFGHI ALFQGHTPAI PLDETKGMAE PPDIQNRESN 420 NKVESINFCF GSNSSSENVV QNMMDMKGNN DDPMNYFSSL NFEGCNFGAF NEFSQPPFED 480 SDGCFSFPMS GSFNYAPKFG GGESSSDNL

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MDPKGSLCAT RSSSLTSPGN GLQTNLSSDP PSFYGVRIES PFEEFIQPSP PTQSVLPGES  60
NTDIDIPDQE NCPLSDSSHT SKLQDWNPSA MLNNLSFLEV KIHQLRDLVH VIVSKKCQPF  120
GQPHELVTQE QQLITADLTS IIVQLISTAG SLLPSVRHTL TNANPLVGQL DQLHGINLPF  180
ESEPSSGIRP QNNSGNKLFD QSIQNDLPNK LEMEQNYNME EHEPKDEEDV DEGENLPPGS  240
YEILQLEKEE ILAPHTHFCT ICGKGFKRDA NLRMHMRGHG DKYKTPAALA KPHKESGSEP  300
KLIKRYSCPY NGCKRNKDHK KFQPLKTILC VKNHYKRTHC DKSYTCSRCN TKKFSVMADL  360
KTHEKHCGKD KWLCSCGTTF SRKDKLFGHI ALFQGHTPAI PLDETKGMAE PPDIQNRESN  420
NKVESINFCF GSNSSSENVV QNMMDMKGNN DDPMNYFSSL NFEGCNFGAF NEFSQPPFED  480
SDGCFSFPMS GSFNYAPKFG GGESSSDNL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN00809.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU127298	0.0	EU127298.1 Glycine max C2-H2 zinc finger protein (STOP1) mRNA, complete cds.
GenBank	EU418733	0.0	EU418733.1 Glycine max C2-H2 zinc finger protein (STOP1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003556206.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Refseq	XP_014628358.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Refseq	XP_028219484.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Swissprot	Q9C8N5	1e-176	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A445F6I0	0.0	A0A445F6I0_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform A
TrEMBL	A0A445F6Q4	0.0	A0A445F6Q4_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform B
TrEMBL	I1NHB7	0.0	I1NHB7_SOYBN; Uncharacterized protein
STRING	GLYMA20G31650.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5340	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-179	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]