PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN00748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 357aa MW: 38803.9 Da PI: 7.5715 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+t+e Aa+a+++a+++++g KHN00748.1 132 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRG 181 8********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-33 | 131 | 190 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.791 | 132 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-38 | 132 | 195 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-14 | 132 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.09E-22 | 132 | 191 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-23 | 132 | 190 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-11 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MVSALTHVVV SSGSGQRSTE WIQQSGFPMM SASSLSCLSS FSSPSSSGAS WVGHKRGREE 60 EESSSSHNMI QQQQQSAPRL FRNIGDFMVP SQGDSSSATE EAPTSTTTSV TAVATTVTET 120 PPPPGGGERR RKYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTEEAAAR AYDEAALRFR 180 GNRAKLNFPE NVRAVPPIQP FQATTRLTVS DSTTSQFRPL VTETPPFIQQ PQIQGSSDLI 240 RDYLQYSQLL QSDFQQQQIQ QQSPSSLLQQ LYYNAQLASL QSPSVLSSSP SFSSSVSPTP 300 FPLFSTSAQF SSASFPMFSS QQMGYFQLPE SCPPAGGVPE FPPSTWSGTS GQPPPSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-23 | 131 | 192 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 132 | ERRRKY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN00748.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235300 | 0.0 | AC235300.1 Glycine max strain Williams 82 clone GM_WBb0063F04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014621193.1 | 0.0 | ethylene-responsive transcription factor ABR1 isoform X1 | ||||
Refseq | XP_028199565.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A445LL03 | 0.0 | A0A445LL03_GLYSO; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | K7K715 | 0.0 | K7K715_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G08835.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-28 | ethylene response factor 110 |
Publications ? help Back to Top | |||
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