PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00624.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 228aa    MW: 24852.2 Da    PI: 7.6244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00624.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.6e-214392255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a++aa+++++g
  KHN00624.1 43 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAMAYDAAALRFKG 92
                8********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-3342101IPR001471AP2/ERF domain
CDDcd000185.43E-2242101No hitNo description
PROSITE profilePS5103225.27743100IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2343101IPR016177DNA-binding domain
PfamPF008473.5E-144392IPR001471AP2/ERF domain
SMARTSM003803.3E-3743106IPR001471AP2/ERF domain
PRINTSPR003678.8E-124455IPR001471AP2/ERF domain
PRINTSPR003678.8E-126682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSNNKNNTFF PTPHGQISTS EFVNSQNPPQ ATNQGIDDIR KKHYRGVRQR PWGKWAAEIR  60
DPKKAARVWL GTFDTAEAAA MAYDAAALRF KGNKAKLNFP ERVVMPIPPQ TNNNNSTSSS  120
APTTQSSSSL PPPQSLHNNS SLSAEGFPNL EEYARLLSCS DDDDFQRVAL GLYQHHNNED  180
FICGSSQPPP VPFFVSSSSS SSAMTSSYSD FLGQGGSTGF DEGNKRGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2742103163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993980.0BT099398.1 Soybean clone JCVI-FLGm-23J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239988.11e-170uncharacterized LOC100796480
RefseqXP_028198379.11e-170ethylene-responsive transcription factor ERF113-like
TrEMBLA0A445LKC61e-168A0A445LKC6_GLYSO; Ethylene-responsive transcription factor ERF114
TrEMBLC6TNR71e-168C6TNR7_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA02G07310.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2013335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-31ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]