PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00561.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 304aa    MW: 32195.5 Da    PI: 6.162
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00561.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.58.3e-25222284163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++l++e++kl+se+
  KHN00561.1 222 ERELKRQKRKQSNRESARRSRLRKQAECEELQKRVESLGGENQTLRDELQRLSEECEKLTSEN 284
                 89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.2E-21160IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-782194No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-19217281No hitNo description
PfamPF001703.4E-22222284IPR004827Basic-leucine zipper domain
SMARTSM003382.4E-23222286IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.438224287IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-12225281No hitNo description
CDDcd147023.46E-24227277No hitNo description
PROSITE patternPS000360229244IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MQAYYAPGGT PPPFFASTVA SPTPHPYLWG SQHPLMPPYG TPVPYPAIYP PGSIYAHPSM  60
AVNPSIVQQS TEIEGKGADG KDRDLSKKLK GTSANTGSKA GESGKAGSGS GNDGISQSGE  120
SGSEGSSNAS DENTNQQESA AKKKGSFDLM LVDGANAQNN SAGAISQSSV PGKPVVPMPA  180
TNLNIGMDLW NASSGGAEAA KMRHNQSGAP GVALGDQWVQ DERELKRQKR KQSNRESARR  240
SRLRKQAECE ELQKRVESLG GENQTLRDEL QRLSEECEKL TSENNSIKEE LERLCGPEAV  300
ANLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238244RRSRLRK
2238245RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00561.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941890.0BT094189.1 Soybean clone JCVI-FLGm-24N9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574484.10.0bZIP transcription factor bZIP115 isoform X1
RefseqXP_006574485.10.0bZIP transcription factor bZIP115 isoform X1
RefseqXP_025980160.10.0bZIP transcription factor bZIP115 isoform X1
RefseqXP_028197518.10.0G-box-binding factor 1-like isoform X1
RefseqXP_028197525.10.0G-box-binding factor 1-like isoform X1
SwissprotP427741e-105GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A445LKG80.0A0A445LKG8_GLYSO; G-box-binding factor 1 isoform A
TrEMBLK7K6N50.0K7K6N5_SOYBN; Uncharacterized protein
STRINGGLYMA02G06550.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.12e-94G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]