PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00536.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 333aa    MW: 37279.9 Da    PI: 8.6286
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00536.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.43.6e-33113167459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +rY+eClkNhAas+Ggh++DGCgEfmp+ geegt+++lkCaAC+CHRnFHR+e+++
   KHN00536.1 113 FRYRECLKNHAASMGGHVTDGCGEFMPN-GEEGTPESLKCAACECHRNFHRKEPHQ 167
                  79*************************8.999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-30113165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-31114164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-20114164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.979115164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.51E-19262330IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-29262331IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-26269326IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDMREQDKVI EMPSTLGYNN SSSGSKLSSP IGERSSDQLP PHQSHTLVFT DPPQTSSHHH  60
NLYPPSLPPN PLQLPQPHHR PRRDPDPSSI ISPPIISTTP TTAPPQPHTT TLFRYRECLK  120
NHAASMGGHV TDGCGEFMPN GEEGTPESLK CAACECHRNF HRKEPHQGVL VESQLQHVLL  180
NKNNRNINTI IHSPDSHHHL QFPTPHSHLH GGPPVVQPVM LGFGGSGPAE SSSEDLNMFQ  240
TNDHGGGGNN LLLSSVQQQP PLLSSSSSKK RFRTKFTQQQ KDRMMEFAEK LGWKIQKQDE  300
QELHQFCSQV GVRRQVFKVW MHNSKQALKK KQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-222683271675ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00536.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150349e-90AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028197251.10.0zinc-finger homeodomain protein 6-like
TrEMBLA0A445LJZ40.0A0A445LJZ4_GLYSO; Zinc-finger homeodomain protein 6
STRINGGLYMA02G06270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-60homeobox protein 24
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]