PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN00536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 333aa MW: 37279.9 Da PI: 8.6286 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.4 | 3.6e-33 | 113 | 167 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY+eClkNhAas+Ggh++DGCgEfmp+ geegt+++lkCaAC+CHRnFHR+e+++ KHN00536.1 113 FRYRECLKNHAASMGGHVTDGCGEFMPN-GEEGTPESLKCAACECHRNFHRKEPHQ 167 79*************************8.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.2E-30 | 113 | 165 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.8E-31 | 114 | 164 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-20 | 114 | 164 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.979 | 115 | 164 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.51E-19 | 262 | 330 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-29 | 262 | 331 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.2E-26 | 269 | 326 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MDMREQDKVI EMPSTLGYNN SSSGSKLSSP IGERSSDQLP PHQSHTLVFT DPPQTSSHHH 60 NLYPPSLPPN PLQLPQPHHR PRRDPDPSSI ISPPIISTTP TTAPPQPHTT TLFRYRECLK 120 NHAASMGGHV TDGCGEFMPN GEEGTPESLK CAACECHRNF HRKEPHQGVL VESQLQHVLL 180 NKNNRNINTI IHSPDSHHHL QFPTPHSHLH GGPPVVQPVM LGFGGSGPAE SSSEDLNMFQ 240 TNDHGGGGNN LLLSSVQQQP PLLSSSSSKK RFRTKFTQQQ KDRMMEFAEK LGWKIQKQDE 300 QELHQFCSQV GVRRQVFKVW MHNSKQALKK KQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-22 | 268 | 327 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN00536.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 9e-90 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028197251.1 | 0.0 | zinc-finger homeodomain protein 6-like | ||||
TrEMBL | A0A445LJZ4 | 0.0 | A0A445LJZ4_GLYSO; Zinc-finger homeodomain protein 6 | ||||
STRING | GLYMA02G06270.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 3e-60 | homeobox protein 24 |
Publications ? help Back to Top | |||
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