PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN00507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 195aa MW: 21313.4 Da PI: 8.0466 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 172.5 | 2.1e-53 | 1 | 126 | 22 | 154 |
DUF702 22 eRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrv 120 +RCRtCCksrg+dC+thvkstWvpa+krrerqq+laa+++++ +e++++++r+ +++ + +s+t+l+s+ e ++P+ vss+a frcvrv KHN00507.1 1 MRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQALAALQQQQ----QEQQQQQQRDISKRPRDPTSCTRLPSSGL---EEEGNFPSVVSSPAEFRCVRV 92 7***********************************997776....44566667777777888899999998754...46778**************** PP DUF702 121 ssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s v+d+++ +aYqtavsigGhvfkGiLyd+G+e+ KHN00507.1 93 SCVEDADDRYAYQTAVSIGGHVFKGILYDYGPEN 126 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.3E-54 | 1 | 125 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.9E-17 | 1 | 28 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.8E-25 | 77 | 124 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MRCRTCCKSR GYDCQTHVKS TWVPASKRRE RQQALAALQQ QQQEQQQQQQ RDISKRPRDP 60 TSCTRLPSSG LEEEGNFPSV VSSPAEFRCV RVSCVEDADD RYAYQTAVSI GGHVFKGILY 120 DYGPENNNHN NSNNNSNNNY TAGETSAGVV AAAQPLNLAA ISSAALVDTS SLYSAPVNAF 180 MAGGSGTQFF PHTRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN00507.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028196870.1 | 1e-143 | protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_028196876.1 | 1e-143 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9SD40 | 3e-56 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A445LJS7 | 1e-141 | A0A445LJS7_GLYSO; Protein SHORT INTERNODES isoform A | ||||
STRING | GLYMA02G05830.1 | 1e-141 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 1e-45 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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