PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN00248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 19814.3 Da PI: 8.1146 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.8 | 1.4e-06 | 3 | 30 | 22 | 54 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksL 54 L+el+P++ K +Ka++L A+eY+k L KHN00248.1 3 ILKELIPNC-----NKTDKASMLDDAIEYLKTL 30 59******8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.712 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-10 | 2 | 42 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-9 | 3 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.42E-7 | 4 | 35 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRILKELIPN CNKTDKASML DDAIEYLKTL KLQIQMMSMD AGFCIPFMML RNAAHHMMNT 60 PLLHQLMGLG MGFRPDTAIP CSLPQFPITP LPAITDNRVH FFGFPNQVPP MPISHAPFIP 120 MLGNPSTQTP LATSTAINLA ENPASSQLTT LMASVPKNLY LSGQSEYATK QAPSQVSLHH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN00248.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095854 | 1e-164 | BT095854.1 Soybean clone JCVI-FLGm-15A10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014619566.1 | 1e-130 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
Refseq | XP_028183410.1 | 1e-130 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like | ||||
TrEMBL | A0A445LHY0 | 1e-129 | A0A445LHY0_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 (Fragment) | ||||
STRING | GLYMA02G00981.1 | 1e-129 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13329 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 5e-18 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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