PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00243.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 463aa    MW: 52324.3 Da    PI: 10.031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00243.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.43.3e-19251300250
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEE CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvvei 50 
                 +Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v++ ++  ++++ 
  KHN00243.1 251 SDGCQWRKYGQKIAKGNPCPRAYYRCTMAvGCPVRKQVKKHSKHCRTCNR 300
                 7***************************************9987776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-21235309IPR003657WRKY domain
SuperFamilySSF1182902.35E-17244297IPR003657WRKY domain
PROSITE profilePS5081122.068245308IPR003657WRKY domain
SMARTSM007749.0E-15250311IPR003657WRKY domain
PfamPF031062.9E-16252309IPR003657WRKY domain
PfamPF015291.2E-6287312IPR001594Zinc finger, DHHC-type, palmitoyltransferase
PROSITE profilePS5021611.391291309IPR001594Zinc finger, DHHC-type, palmitoyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0019706Molecular Functionprotein-cysteine S-palmitoyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MENHHQILQQ PNREFTLLRS TDFLRQNLNL DPPTINTGKH VDPSIKEVDF FSSSSSPPKN  60
SDTYNSSQEE SRDRRTNMAK DDRSPTLFND QLVNTALNLS PGAGVSRSAA NDENLKTLLN  120
TLQRESLRLQ EENCKLRSML DQITKNNYQL QLFIALQKQK QCQKVETNSM IFGQHLLDPR  180
PCTKLDAQVA SFPDDKSGQQ GDPVEDVLEQ TSSHSWGSSK SPTFEKSKPS ELPFKKTRVS  240
VRAKSEAPLI SDGCQWRKYG QKIAKGNPCP RAYYRCTMAV GCPVRKQVKK HSKHCRTCNR  300
CVEGFDHHCR LLIKGGTAIA IFIRCFVDRR GIEKELQRKL YVDFPRGVLA TICSSPRLSI  360
RIEGETEPSP SPLIKTKKFH VSINSQTKGR LNESPGRFSS PRRRFSAGSP TVFSSSMMAS  420
PHHKYRSSFD LKLTGVSREL ETHISRQVLC SVISKDDSEP SPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-13241308874Probable WRKY transcription factor 4
2lex_A6e-13241308874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00243.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195521e-106EU019552.1 Glycine max WRKY1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192238.10.0probable WRKY transcription factor 47
TrEMBLA0A445LI460.0A0A445LI46_GLYSO; WRKY transcription factor 42 isoform A
STRINGGLYMA02G01031.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.13e-39WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]