PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN00233.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 714aa MW: 79206.2 Da PI: 7.225

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN00233.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.3	1.4e-40	155	232	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvCe+hska+ +lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ KHN00233.1 155 VCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNH 232 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.1E-33	149	217	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.18	153	230	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.67E-38	154	234	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-29	156	229	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.49E-7	486	598	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-6	487	598	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.21E-7	488	599	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MEAKFGAEAY HFCGVGASSD LRGVGKRSSE WDLNDWRWDG DLFIASRLNP VPADGVGVGQ 60 QFFPIGSGIP VAGGPSNSSS TSEEVDPRDP KANKEGDKKR RVIVLEDDGL NEEGGTLSLK 120 LGGHASAVVD REVGSWDGTN GKKSRVSGST SNRAVCQVED CSADLSKAKD YHRRHKVCEM 180 HSKASRALVG NAMQRFCQQC SRFHLLQEFD EGKRSCRRRL AGHNKRRRKT NHEAVPNGSS 240 LNDDQTSSYL LISLLKILSN MHCQVVIDTS LPFRSNNYSK ILTVSPIAVP ASKRAQFSVK 300 GVNLIRPATR LMCALEGKYL VCEDDHMSMD QCSKEPDELQ CVQFSCSVPV MNGRGFIEIE 360 DQGLSSSFFP FIVVEEDVCS EICTLEPLLE LSETDPDIEG AGKIKAKNQA MDFIHEMGWL 420 LHRSQLKLRM VSSVDLFPLK RFKWLIEFSM DQDWCAAVRK LLNLLFDGTV NTGDHPSLYL 480 ALSEMGLLHK AVRRNSKHLV ELLLRYVPEN ISDKLGPEEK ALVDGENQTF LFRPDVDGTA 540 GLTPLHIAAG KDGSEDVLDA LTNDPCMVGI EAWKNARDST GSTPEDYARL RGHYAYIHLV 600 QKKINKKQGA AHVVVEIPSN MTENNTNKKQ NELSTIFEIG KPEVRRGQGH CKLCDNRISC 660 RTAVGRSMVY RPAMLSMVAI AAVCVCVALL FKSSPEVICM FRPFRWENLD FGTS

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MEAKFGAEAY HFCGVGASSD LRGVGKRSSE WDLNDWRWDG DLFIASRLNP VPADGVGVGQ  60
QFFPIGSGIP VAGGPSNSSS TSEEVDPRDP KANKEGDKKR RVIVLEDDGL NEEGGTLSLK  120
LGGHASAVVD REVGSWDGTN GKKSRVSGST SNRAVCQVED CSADLSKAKD YHRRHKVCEM  180
HSKASRALVG NAMQRFCQQC SRFHLLQEFD EGKRSCRRRL AGHNKRRRKT NHEAVPNGSS  240
LNDDQTSSYL LISLLKILSN MHCQVVIDTS LPFRSNNYSK ILTVSPIAVP ASKRAQFSVK  300
GVNLIRPATR LMCALEGKYL VCEDDHMSMD QCSKEPDELQ CVQFSCSVPV MNGRGFIEIE  360
DQGLSSSFFP FIVVEEDVCS EICTLEPLLE LSETDPDIEG AGKIKAKNQA MDFIHEMGWL  420
LHRSQLKLRM VSSVDLFPLK RFKWLIEFSM DQDWCAAVRK LLNLLFDGTV NTGDHPSLYL  480
ALSEMGLLHK AVRRNSKHLV ELLLRYVPEN ISDKLGPEEK ALVDGENQTF LFRPDVDGTA  540
GLTPLHIAAG KDGSEDVLDA LTNDPCMVGI EAWKNARDST GSTPEDYARL RGHYAYIHLV  600
QKKINKKQGA AHVVVEIPSN MTENNTNKKQ NELSTIFEIG KPEVRRGQGH CKLCDNRISC  660
RTAVGRSMVY RPAMLSMVAI AAVCVCVALL FKSSPEVICM FRPFRWENLD FGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-31	147	229	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN00233.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028192377.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_028192384.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	1e-161	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A445LHZ5	0.0	A0A445LHZ5_GLYSO; Squamosa promoter-binding-like protein 1 isoform A
STRING	GLYMA02G01160.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-154	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]