PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00134.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 977aa    MW: 105781 Da    PI: 8.0532
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00134.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.12.9e-06165183119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+Cq++CH+GpC pC+
  KHN00134.1 165 CGRHRCQQICHLGPCHPCQ 183
                 ******************6 PP
2zf-NF-X117.59e-06287304118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG+H C+++CH G+C pC
  KHN00134.1 287 CGIHHCEEPCHAGDCSPC 304
                 ****************** PP
3zf-NF-X118.35.2e-06383401119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H C++lCH G CppC 
  KHN00134.1 383 CGQHACESLCHSGHCPPCL 401
                 ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060085.77E-590148No hitNo description
SMARTSM004380.29110128IPR000967Zinc finger, NF-X1-type
PfamPF014227.3112127IPR000967Zinc finger, NF-X1-type
CDDcd060089.47E-11155203No hitNo description
PfamPF014221.2E-4165182IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043165184IPR000967Zinc finger, NF-X1-type
CDDcd060081.15E-8219272No hitNo description
PfamPF014220.0012229246IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034229248IPR000967Zinc finger, NF-X1-type
CDDcd060087.79E-13277325No hitNo description
PfamPF014221.2E-4287304IPR000967Zinc finger, NF-X1-type
SMARTSM004384.4E-4287306IPR000967Zinc finger, NF-X1-type
PfamPF0142216345356IPR000967Zinc finger, NF-X1-type
SMARTSM0043857345375IPR000967Zinc finger, NF-X1-type
CDDcd060088.88E-9373416No hitNo description
PfamPF014229.8E-5383400IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1E-4383402IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9440458IPR000967Zinc finger, NF-X1-type
PfamPF0142213447457IPR000967Zinc finger, NF-X1-type
PfamPF014220.14493508IPR000967Zinc finger, NF-X1-type
SMARTSM004385.6493522IPR000967Zinc finger, NF-X1-type
CDDcd060086.57E-5520569No hitNo description
PfamPF0142222524551IPR000967Zinc finger, NF-X1-type
SMARTSM004380.033531552IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.3E-4777821IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MICYDMVRRS APIWSCSGCF SIFHLTCIKK WARAPISVDL SVEKNQGGFN WRCPGCQSVQ  60
LTSSKDIRYL CFCGKRPDPP SDLYLMPHSC GEPCGKPLER DLQGDKELLC PHLCVLQCHP  120
GPCPPCKAFA PPRLCPCGKK NITTRCSDRQ SVLTCGQRCQ KLLQCGRHRC QQICHLGPCH  180
PCQVPINASC FCAQKMEVIL CGEMAVKGEI RADGGVFSCG STCQKKLNCG NHICIETCHP  240
GSCGDCELLP SRIKTCCCGK TRLEEKRHSC LDPIPTCSQV CGKYLPCGIH HCEEPCHAGD  300
CSPCLVLVSQ KCRCGSTSRT VECCKTKMEN EKFTCERPCG QKKNCGRHRC SERCCPLSNP  360
NNILNADWDP HFCQLPCGKK LRCGQHACES LCHSGHCPPC LETIFTDLTC ACGKTSIPPP  420
LPCGTPPPSC QLPCSVPQPC SHPASHSCHF GDCPPCSMPI AKECIGGHVV LRNIPCGSKD  480
IKCNKLCGKT RQCGLHACGR TCHLPPCDNL SAVPGIRASC GQTCGAPRRD CRHTCTAPCH  540
PSTPCPDTRC KFPVTITCSC GRITENVPCD AGGSCANYNA DTVHEASIIQ KLPVLLQPVA  600
ANGKKVPLGQ RKLMCNDDCA KLERKRVLAD AFEITAPNLD SLHFGENSVA SELLADMLRR  660
DSKWVLSVEE RCKFLVLGKS RGNAHGPKVH VFCPMLKDKR DAVRVIAERW KLAVNAAGRE  720
PKHFVVVHVT PKSRAPARVL GFKGTTTVNV PLPPAFDPLV DMDPRLVVSF IDLPMDADIS  780
ALVLRFGGEC ELVWLNDKNA LAVFNDPARA ATAMRRLDHG TVYQGAVVVV VPNVGASVAS  840
SATNAWGGSG TMKGGALAAL KSNPWKKDVI QEPGWREDAW GDEEWATGSA NVKLPIQKKE  900
ARISASVNPW SVLNQESSSS SSVAAIKIDG SRKHSESSVI TKLEPRDGGS NLGGQPAGNF  960
DALEASDVVD DWEKACE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00134.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028242958.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A445JAN20.0A0A445JAN2_GLYSO; NF-X1-type zinc finger protein NFXL1 isoform A
STRINGGLYMA08G06040.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1