PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99702.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 382aa    MW: 42103.3 Da    PI: 5.1685
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99702.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11204249454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+L
  KHM99702.1 204 DHIMAERKRREKLSQSFIALAALVPGL-----KKMDKASVLGDAIKYVKEL 249
                 699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.478200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16204265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-16205266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-12205253No hitNo description
SMARTSM003531.7E-13206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMEELNKPMD GSATSWLSDL EMDDYNLFPD ECPLNLNLFD DQEFLSQDIA SALQEQTQTL  60
QQSLSSECPS KTVSNSSTDE TTFDFERPAK LLKTTTSSSC CNSDSSTITK SLSPKLSPSS  120
SFSSFQSQIL SFDNPNPTSS SNTTTQFYGF DCTLNPTQNE MVSVSVPNLR KPRFPTQTAK  180
GSPKNQNFET KTSHGKRSPA HAQDHIMAER KRREKLSQSF IALAALVPGL KKMDKASVLG  240
DAIKYVKELK ERLTVLEEQS KKSRAESVVV LNKPDLSGDD DSSSCDESIG ADSVSDSLFE  300
VESRVSGKEM LLRIHCQKQK GLLVKLLAEI QSHHLFVANS SVLPFGDSIL DITIVAQMGE  360
SYNLTTKELV KNLRVAALKI LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13204278880Transcription factor MYC2
5gnj_B7e-13204278880Transcription factor MYC2
5gnj_E7e-13204278880Transcription factor MYC2
5gnj_F7e-13204278880Transcription factor MYC2
5gnj_G7e-13204278880Transcription factor MYC2
5gnj_I7e-13204278880Transcription factor MYC2
5gnj_M7e-13204278880Transcription factor MYC2
5gnj_N7e-13204278880Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213ERKRRE
2209214RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311060.0KT031106.1 Glycine max clone HN_CCL_80 bHLH transcription factor (Glyma05g23530.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028232249.10.0transcription factor bHLH18-like
TrEMBLA0A0B2NWV50.0A0A0B2NWV5_GLYSO; Transcription factor bHLH25
STRINGGLYMA05G23530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-50bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]