PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM99698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HB-other | ||||||||
Protein Properties | Length: 536aa MW: 60454.5 Da PI: 6.5148 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 30 | 85 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ ql++Le++++ n+yp++e++ eLA++l+Lte+q++ WF+ rR k+kk KHM99698.1 30 KKRRLKTPAQLKALEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKK 85 89****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 15 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 26 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.28E-17 | 26 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.8E-20 | 28 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.5E-17 | 30 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.31E-17 | 30 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MHPSFSMLSL QLKVTELQSE ENKLSMEKNK KRRLKTPAQL KALEDFYNDN KYPTEEMKSE 60 LADELELTEK QISGWFCHRR LKDKKMLNDE VCANGRQDRS SGVIQDRGSG LVQDSCGSTK 120 HVHYRYLDPK EVESHGLYNH GFSAADITYG HKNHRYVEND SATDNTSSES SSSLQDRLLC 180 QGQDPYDMEP SSHVTPNGSL LPPNTKGANN MGHKPSGYLK VKGEIEHAAI TAVKKQLGKH 240 YREDGPLLSV EFDTIPPEAF ECQIADLANE AYYAANPALP NSPEVSAVKK QSSLSSRYDS 300 YFTKISSQDS QMVRGDFGSL HDSDFQDKKS HHDINQRRNF QSFTNPLPHK NSCLDFNADS 360 TGEASAYNNT KNCRKGTKHG FDGTRYDSGS NPSDHYEENN LVVNQTDSLL HGYENSNLKN 420 VQRGEYVKSK PSNSVHKSQV YLDTGERRGL NKRMAKEEKF DGDRKIKKQY RDPDEVRVLT 480 NEMTVAKWAK VDPLEQYDVK QSSVAELEPR KSQRSAAEMP SSFSEDETAE TSSSAD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 34 | KKRRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM99698.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028245798.1 | 0.0 | uncharacterized protein LOC114423292 isoform X3 | ||||
TrEMBL | A0A0R0J1J7 | 0.0 | A0A0R0J1J7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G41330.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5792 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 8e-74 | HB-other family protein |
Publications ? help Back to Top | |||
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