PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM99680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 540aa MW: 59569.9 Da PI: 7.0209 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.9 | 1.6e-17 | 332 | 378 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L++l+P++ K +Ka++Le+A+eY+ksLq KHM99680.1 332 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 378 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-19 | 325 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-20 | 326 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.47 | 328 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.27E-16 | 331 | 376 | No hit | No description |
Pfam | PF00010 | 4.9E-15 | 332 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-18 | 334 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MNNSVPDWNF GSDSCVTSTN QKKPMMGVDQ ELVELLWQNG QVVLHSQTHR KPVVNSSNLI 60 QDDETVSWIQ YPLEDPLEQE FCSNLLSELA PCEVESYKQI KPFEEGKFTK LDASSAPHVT 120 VSSQSPTMKS SSFQDFSGIP IPAPRFHVSD SPQKNNNHLG GSCKVQNFSH FSAPLNVSSA 180 SANVHFGDKI TGNMSRNEIR ECSLMTVGSS YCGSNHIPQD PDASRASSNG VWTTTLSVEP 240 EAVRDDVPKT IPQKEKGKSE MLEPAVTSSS GGSGSSLGKT CSLSTRNQGQ KRKGIDVEES 300 EEQSEDTELK SALGNKSSQR TGSARRNRAA EVHNLSERRR RDRINEKMKA LQQLIPHSSK 360 TDKASMLEEA IEYLKSLQLQ LQLMWMGSGM APIMFPGIQH YMSQMGMGMA RPPFPPPIHN 420 PMQLPRVPLD KSVSASQTPN QTLMCQNPIL GAFNYQNQMQ NPALSEQYVR YMGYHLMQNA 480 SQPMNVFRYG PQGVQHSQTM ITPSSNSSGN MSGAANIDEA VSGKMGKPLT FFTLLWLTTN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 336 | 341 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM99680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235243 | 0.0 | AC235243.1 Glycine max strain Williams 82 clone GM_WBb0032L23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003532070.2 | 0.0 | transcription factor PIF4 isoform X1 | ||||
Refseq | XP_006586042.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
Refseq | XP_028245818.1 | 0.0 | transcription factor PIF4-like isoform X1 | ||||
TrEMBL | A0A445JME5 | 0.0 | A0A445JME5_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 isoform A | ||||
STRING | GLYMA08G41620.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8146 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 9e-46 | phytochrome interacting factor 4 |
Publications ? help Back to Top | |||
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