PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99620.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27983.5 Da    PI: 9.8046
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99620.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.46e-312473150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
  KHM99620.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 73
                79***********************************************8 PP
2K-box107.12.1e-35921884100
       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 s+ +s++ea+++ +qqe++kL+++i+ +q+ +Rh+lGe L+sLslkeL++Le +Lek+l+++Rs+K+e l++ +e +qk+e elq++n++Lr+k++e
  KHM99620.1  92 SNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAE 188
                 445559****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-411675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.7961676IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-321789IPR002100Transcription factor, MADS-box
CDDcd002651.74E-421784No hitNo description
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-321838IPR002100Transcription factor, MADS-box
PfamPF003192.2E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323853IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-325374IPR002100Transcription factor, MADS-box
PfamPF014864.0E-2599186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.446102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEDPNQAPEA SSQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VVFSTRGRLY EYANNSVRAT IERYKKANAA ASNAESVSEA NTQFYQQESS KLRRQIRDIQ  120
NLNRHILGEA LGSLSLKELK NLEGRLEKGL SRVRSRKHET LFADVEFMQK REIELQNHNN  180
YLRAKIAEHE RAQQQQSNMN MSGTLCESLP SQSYDRNFFP VNLIASDDQQ QYSRQDHTAL  240
QLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-211688173MEF2C
5f28_B8e-211688173MEF2C
5f28_C8e-211688173MEF2C
5f28_D8e-211688173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2525640.0EU252564.1 Glycine max agamous-like 1 protein (AGL1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240100.11e-180agamous-like MADS-box protein AGL1-like
RefseqXP_006584622.11e-180agamous-like MADS-box protein AGL1-like isoform X3
RefseqXP_025985173.11e-180agamous-like MADS-box protein AGL1-like isoform X4
RefseqXP_028245897.11e-180agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_028245898.11e-180agamous-like MADS-box protein AGL1 isoform X2
RefseqXP_028245899.11e-180agamous-like MADS-box protein AGL1 isoform X2
SwissprotQ93XH41e-120MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A445JMI91e-179A0A445JMI9_GLYSO; Agamous-like MADS-box protein AGL1 isoform A
TrEMBLE3NYN51e-179E3NYN5_SOYBN; Agamous-like 1 protein
TrEMBLI1KY271e-179I1KY27_SOYBN; Uncharacterized protein
STRINGGLYMA08G42300.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-112MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]