PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHM99486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 61279.3 Da PI: 5.0928 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 426 | 3.1e-130 | 176 | 545 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +e L+ cA+a++ +d+e +++l+++l++++s +g+p+qRl ay++e ar+ s+s++yk+l++se + e l+++++++e++P++kf+++ aN KHM99486.1 176 KEMLYMCAKAMAVNDMETTDWLVSELRKMVSISGNPIQRLGAYILESFVARIGASGSTIYKSLKCSEPT---GNELLSYMNVLYEICPYFKFGYMSANG 271 789*****************************************************************9...99************************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 aI ea+ +e++vHi+Df+i+qG+QW++L+qaLa Rp gpp++Ri gv+++ s ++ l +g+rL+ +A++++vpfefn+ v +++++le+L+++ KHM99486.1 272 AIAEALREESEVHIVDFQIGQGTQWVSLIQALARRPVGPPKIRISGVDDSYSAyaRRGGLDIVGKRLSALAQSCHVPFEFNA-VRVPVTEVQLEDLELR 369 *************************************************877799999************************.7999************ PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 p Ea+aVn++++lh+++desv+++++rd++L+l k+lsPkvv++veqe ++n+++Fl+rf+e+++yy a+f+s+++ lpre++eri+vE+++l+re+vn KHM99486.1 370 PYEAVAVNFAISLHHVPDESVNSHNHRDRLLRLAKQLSPKVVTLVEQEFSTNNAPFLQRFVETMNYYLAVFESIDTVLPREHKERINVEQHCLAREVVN 468 *************************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++aceg+er+erhe l+kWr+r+++aGF+p+pls+ +++++k ll+ ++++ y++ee++g+l+lgW+++ Lv+ +aWr KHM99486.1 469 LIACEGEERVERHELLNKWRMRFTKAGFTPYPLSSVINSSIKDLLQSYHGH-YTLEERDGALFLGWMNQVLVASCAWR 545 *************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.701 | 149 | 526 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-127 | 176 | 545 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 545 aa Download sequence Send to blast |
MQTPQNHKIS YGSGGFYVEP VQNLDSYCIP SSENIDNYSS SDNSSQTTYP SVQTLEQYCT 60 LESASTGNSF PSQNSPPALS FSSNNSLLSK LESNSYVLRP QHSLEIASGS PEDDSYLTHD 120 LDGLTHKIRE LETAMLGPNA DMLDIYGTVI PEPDSFLLEA EKWKKMMEIS CRGDLKEMLY 180 MCAKAMAVND METTDWLVSE LRKMVSISGN PIQRLGAYIL ESFVARIGAS GSTIYKSLKC 240 SEPTGNELLS YMNVLYEICP YFKFGYMSAN GAIAEALREE SEVHIVDFQI GQGTQWVSLI 300 QALARRPVGP PKIRISGVDD SYSAYARRGG LDIVGKRLSA LAQSCHVPFE FNAVRVPVTE 360 VQLEDLELRP YEAVAVNFAI SLHHVPDESV NSHNHRDRLL RLAKQLSPKV VTLVEQEFST 420 NNAPFLQRFV ETMNYYLAVF ESIDTVLPRE HKERINVEQH CLAREVVNLI ACEGEERVER 480 HELLNKWRMR FTKAGFTPYP LSSVINSSIK DLLQSYHGHY TLEERDGALF LGWMNQVLVA 540 SCAWR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-59 | 179 | 545 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHM99486.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003532162.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_028246077.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A445JND7 | 0.0 | A0A445JND7_GLYSO; Scarecrow-like protein 5 isoform A | ||||
TrEMBL | I1KYG8 | 0.0 | I1KYG8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G43780.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|