PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM99037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 549aa MW: 60179.9 Da PI: 9.5152 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H KHM99037.1 79 FICEVCNKGFQREQNLQLHRRGH 101 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00041 | 155 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ KHM99037.1 155 WKCEKCSKKYAVQSDWKAHSKTC 177 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.1E-6 | 78 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.18E-7 | 78 | 101 | No hit | No description |
Pfam | PF12171 | 2.7E-5 | 79 | 101 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 120 | 150 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.2E-5 | 143 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.18E-7 | 150 | 175 | No hit | No description |
SMART | SM00355 | 140 | 155 | 175 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MASASSSTPF LGIRQENQSH VTQQQQHQSS TTAASSTTTT SATPTTVPQK KRRNQPGTPY 60 PDAEVIALSP KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK TNKEPKRKVY 120 LCPEPTCVHH DPSRALGDLT GIKKHYSRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR 180 EYRCDCGTLF SRRDSFITHR AFCDALAHDS ARHPSSLNPL GTHHLYGTNH MSLGLSAQLQ 240 NHQAATNSIL SLGSAPKFEH LISPNLHHSP SSFGVQSPPP PPQSSSFFMT DPNQAFQDLQ 300 SQNQGHLFSN KQLHGLMQLP DLQGTTNINS TTSASSVSGS ANNTNLFNLS FFPNTNASGS 360 IINDQFSNMT GVTNNNQGTA TLYSTNSPVN SNQVGLSSLF GNSSVQQDNM SPHMSATALL 420 QKAAQMGSTT TTNELGMRSS MEDDEHSNHL RGLMNSFVNG NNLGQFHNVV EEPKKMPQNN 480 NLGLCFGGSD KLTLDFLGVG GMVRNMNNGG GFSQREQQQQ QHSMGITMSP LDPKLESAKA 540 NQHYGTSTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 151 | 218 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 151 | 218 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM99037.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC160454 | 1e-165 | AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605451.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_006605452.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_028222360.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_028222361.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q8GYC1 | 1e-133 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-132 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A0B2NUV5 | 0.0 | A0A0B2NUV5_GLYSO; Protein indeterminate-domain 4, chloroplastic isoform B | ||||
TrEMBL | I1NCZ9 | 0.0 | I1NCZ9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G00840.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-109 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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